1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.000000000583:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEM_RS04830
Histidine kinase, Classic
Bacillus cereus BAG6O-2 · GCF_000293545
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000293545#IEM_RS04830Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 359 aa (69.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 18.9% of protein
Raw token
HisKA:120:6.55e-19:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:238:1.09e-26:348:111:109- Raw architecture: HAMP:39:0.000000000583:109:71:69#HisKA:120:6.55e-19:187:68:64#HATPase_c:238:1.09e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000293545::NZ_JH804628.1::G00011
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span917675-921750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEM_00984RefSeq proteinWP_002110999.1
Context group ID
GCF_000293545::NZ_JH804628.1::G00011Context members
IEM_RS04830IEM_RS04835IEM_RS04840
Partner locus tags
IEM_RS04830IEM_RS04835IEM_RS04840
Partner old locus tags
IEM_00984IEM_00985IEM_00986
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002110999.1Primary protein accession used for annex mappings.
UniProt accessionA0A1D3MQ20Primary UniProt accession resolved in the annex database.
UniProt IDA0A1D3MQ20_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEM_RS04830Primary locus identifier stored in the genes table.
Old locus tagIEM_00984Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804628.1Sequence record reported by the local genomic context database.
Genomic interval917 675-918 754 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span917 675-921 750 ntGCF_000293545::NZ_JH804628.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293545::NZ_JH804628.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804628.1All displayed genes belong to this local TCS context.
Neighborhood span917 675-921 750 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
917 675 nt921 750 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
IEM_RS04830GCF_000293545#IEM_RS04830
HKClassicCurrent focus
917 675-918 754 nt · Reverse (-)
IEM_RS04835GCF_000293545#IEM_RS04835
RROmpR
918 751-919 464 nt · Reverse (-)
IEM_RS04840GCF_000293545#IEM_RS04840
HKClassic
919 960-921 750 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS04830The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753126
Simplified PFAM architecture for HKOC_2753126
PFAM domain coverage: 178 / 359 aa (49.6%)
1 aa359 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[120-186] | HATPase_c[238-348]
- Domain count: 2
- Matched identifier: HKOC_2753126
- Positioned domains: HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS04830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 193 · GCF_000293545
AssemblyBaci_cere_BAG60-2_G13207_V1 · Scaffoldhaploid
Genome composition5 747 228 bp · 35,0% GCBacillus cereus BAG6O-2
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key