1 Response_reg#1
5-122 aa · 118 aa · 50.2% of protein
Raw token
Response_reg:5:1.87e-21:122:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IE1_RS10280
Response regulator OmpR family
Bacillus cereus BAG3O-2 · GCF_000291535
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000291535#IE1_RS10280Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 235 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-230 aa · 74 aa · 31.5% of protein
Raw token
Trans_reg_C:157:7.55e-24:230:79:77- Raw architecture: Response_reg:5:1.87e-21:122:119:111#Trans_reg_C:157:7.55e-24:230:79:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000291535::NZ_JH791899.1::G00024
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span1971890-1975591Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIE1_01991RefSeq proteinWP_000286076.1
Context group ID
GCF_000291535::NZ_JH791899.1::G00024Context members
IE1_RS10280IE1_RS10285IE1_RS10290
Partner locus tags
IE1_RS10280IE1_RS10285IE1_RS10290
Partner old locus tags
IE1_01991IE1_01992IE1_01993
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000286076.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6QP51Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6QP51_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIE1_RS10280Primary locus identifier stored in the genes table.
Old locus tagIE1_01991Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791899.1Sequence record reported by the local genomic context database.
Genomic interval1 971 890-1 972 597 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 971 890-1 975 591 ntGCF_000291535::NZ_JH791899.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291535::NZ_JH791899.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791899.1All displayed genes belong to this local TCS context.
Neighborhood span1 971 890-1 975 591 nt3 702 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 971 890 nt1 975 591 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
IE1_RS10280GCF_000291535#IE1_RS10280
RROmpRCurrent focus
1 971 890-1 972 597 nt · Forward (+)
IE1_RS10285GCF_000291535#IE1_RS10285
HKClassic
1 972 572-1 974 062 nt · Forward (+)
IE1_RS10290GCF_000291535#IE1_RS10290
HKClassic
1 974 062-1 975 591 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000238655#HMPREF1014_RS06955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1017211
Simplified PFAM architecture for RROC_1017211
PFAM domain coverage: 192 / 235 aa (81.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-122] | Trans_reg_C[157-230]
- Domain count: 2
- Matched identifier: RROC_1017211
- Positioned domains: Response_reg 5-122 ; Response_reg 5-122 ; Trans_reg_C 157-230 ; Trans_reg_C 157-230
Cluster members and taxonomy
Representative gene: GCF_000238655#HMPREF1014_RS06955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 182 · GCF_000291535
AssemblyBaci_cere_BAG3O-2_G13191_V1 · Scaffoldhaploid
Genome composition5 856 021 bp · 35,0% GCBacillus cereus BAG3O-2
Signal transduction countsGenes 110 · HK 60 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key