1 PAS_4#1
238-317 aa · 80 aa · 9.8% of protein
Raw token
PAS_4:238:0.0000243:317:84:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICY_RS25870
Histidine kinase, Classic
Bacillus cereus BAG2X1-3 · GCF_000291515
ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000291515#ICY_RS25870Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PASHisKAHATPase_c
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage471 / 820 aa (57.4%)Merged over positioned domains only.
Domain description2 PAS_4,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation5 items
2 PAS#2
329-443 aa · 115 aa · 14.0% of protein
Raw token
PAS:329:0.00000000000531:443:116:1133 PAS_4#3
472-581 aa · 110 aa · 13.4% of protein
Raw token
PAS_4:472:0.0000000000716:581:112:1104 HisKA#4
598-659 aa · 62 aa · 7.6% of protein
Raw token
HisKA:598:0.0000000000000745:659:62:645 HATPase_c#5
704-807 aa · 104 aa · 12.7% of protein
Raw token
HATPase_c:704:2.68e-25:807:107:109- Raw architecture: PAS_4:238:0.0000243:317:84:110#PAS:329:0.00000000000531:443:116:113#PAS_4:472:0.0000000000716:581:112:110#HisKA:598:0.0000000000000745:659:62:64#HATPase_c:704:2.68e-25:807:107:109
- Domain description: 2 PAS_4,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000291515::NZ_JH791917.1::G00057
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span73225-75687Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICY_05165RefSeq proteinWP_000899490.1
Context group ID
GCF_000291515::NZ_JH791917.1::G00057Context members
ICY_RS25870
Partner locus tags
ICY_RS25870
Partner old locus tags
ICY_05165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000899490.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A8Q1P3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A8Q1P3_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICY_RS25870Primary locus identifier stored in the genes table.
Old locus tagICY_05165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791917.1Sequence record reported by the local genomic context database.
Genomic interval73 225-75 687 nt2 463 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 225-75 687 ntGCF_000291515::NZ_JH791917.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291515::NZ_JH791917.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791917.1All displayed genes belong to this local TCS context.
Neighborhood span73 225-75 687 nt2 463 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 225 nt75 687 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ICY_RS25870GCF_000291515#ICY_RS25870
HKClassicCurrent focus
73 225-75 687 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291515#ICY_RS25870The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529662
Simplified PFAM architecture for HKOC_0529662
PFAM domain coverage: 500 / 820 aa (61.0%)
1 aa820 aa
5TM-5TMR_LYTPAS_4PAS_9HisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[21-144] | PAS_4[338-448] | PAS_9[483-580] | HisKA[598-659] | HATPase_c[704-808]
- Domain count: 5
- Matched identifier: HKOC_0529662
- Positioned domains: 5TM-5TMR_LYT 21-144 ; PAS_4 338-448 ; PAS_9 483-580 ; HisKA 598-659 ; HATPase_c 704-808
Cluster members and taxonomy
Representative gene: GCF_000291515#ICY_RS25870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 181 · GCF_000291515
AssemblyBaci_cere_BAG2X1-3_G13211_V1 · Scaffoldhaploid
Genome composition5 250 571 bp · 35,5% GCBacillus cereus BAG2X1-3
Signal transduction countsGenes 98 · HK 53 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key