1 GAF#1
29-166 aa · 138 aa · 26.4% of protein
Raw token
GAF:29:0.00000000000027:166:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICY_RS25340
Histidine kinase, Classic
Bacillus cereus BAG2X1-3 · GCF_000291515
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291515#ICY_RS25340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage411 / 523 aa (78.6%)Merged over positioned domains only.
Domain description2 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation4 items
2 GAF#2
203-316 aa · 114 aa · 21.8% of protein
Raw token
GAF:203:0.000000000323:316:127:1333 HisKA_3#3
333-400 aa · 68 aa · 13.0% of protein
Raw token
HisKA_3:333:1.32e-21:400:68:684 HATPase_c#4
433-523 aa · 91 aa · 17.4% of protein
Raw token
HATPase_c:433:0.000000000326:523:106:109- Raw architecture: GAF:29:0.00000000000027:166:141:133#GAF:203:0.000000000323:316:127:133#HisKA_3:333:1.32e-21:400:68:68#HATPase_c:433:0.000000000326:523:106:109
- Domain description: 2 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291515::NZ_JH791916.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span168629-170868Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICY_05040RefSeq proteinWP_000488145.1
Context group ID
GCF_000291515::NZ_JH791916.1::G00055Context members
ICY_RS25340ICY_RS25345
Partner locus tags
ICY_RS25340ICY_RS25345
Partner old locus tags
ICY_05040ICY_05041
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000488145.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A8PZB5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A8PZB5_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICY_RS25340Primary locus identifier stored in the genes table.
Old locus tagICY_05040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791916.1Sequence record reported by the local genomic context database.
Genomic interval168 629-170 200 nt1 572 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span168 629-170 868 ntGCF_000291515::NZ_JH791916.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291515::NZ_JH791916.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791916.1All displayed genes belong to this local TCS context.
Neighborhood span168 629-170 868 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
168 629 nt170 868 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICY_RS25340GCF_000291515#ICY_RS25340
HKClassicCurrent focus
168 629-170 200 nt · Forward (+)
ICY_RS25345GCF_000291515#ICY_RS25345
RRNarL
170 221-170 868 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291515#ICY_RS25340The current gene is the representative for this cluster.
PFAM architectureGAF_2 + GAF + HisKA_3 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1380058
Simplified PFAM architecture for HKOC_1380058
PFAM domain coverage: 409 / 523 aa (78.2%)
1 aa523 aa
GAF_2GAFHisKA_3HATPase_c
- Simplified architecture: GAF_2 + GAF + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[28-166] | GAF[204-316] | HisKA_3[333-400] | HATPase_c[434-522]
- Domain count: 4
- Matched identifier: HKOC_1380058
- Positioned domains: GAF_2 28-166 ; GAF 204-316 ; HisKA_3 333-400 ; HATPase_c 434-522
Cluster members and taxonomy
Representative gene: GCF_000291515#ICY_RS25340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 181 · GCF_000291515
AssemblyBaci_cere_BAG2X1-3_G13211_V1 · Scaffoldhaploid
Genome composition5 250 571 bp · 35,5% GCBacillus cereus BAG2X1-3
Signal transduction countsGenes 98 · HK 53 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key