1 HisKA#1
160-226 aa · 67 aa · 17.4% of protein
Raw token
HisKA:160:0.0000000000000398:226:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICY_RS12070
Histidine kinase, Classic
Bacillus cereus BAG2X1-3 · GCF_000291515
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291515#ICY_RS12070Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 385 aa (45.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
273-380 aa · 108 aa · 28.1% of protein
Raw token
HATPase_c:273:3.06e-26:380:109:109- Raw architecture: HisKA:160:0.0000000000000398:226:67:64#HATPase_c:273:3.06e-26:380:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291515::NZ_JH791914.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2299349-2301191Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICY_02408RefSeq proteinWP_001243284.1
Context group ID
GCF_000291515::NZ_JH791914.1::G00025Context members
ICY_RS12065ICY_RS12070
Partner locus tags
ICY_RS12065ICY_RS12070
Partner old locus tags
ICY_02407ICY_02408
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001243284.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICY_RS12070Primary locus identifier stored in the genes table.
Old locus tagICY_02408Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791914.1Sequence record reported by the local genomic context database.
Genomic interval2 300 034-2 301 191 nt1 158 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 299 349-2 301 191 ntGCF_000291515::NZ_JH791914.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291515::NZ_JH791914.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791914.1All displayed genes belong to this local TCS context.
Neighborhood span2 299 349-2 301 191 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 299 349 nt2 301 191 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICY_RS12065GCF_000291515#ICY_RS12065
RROmpR
2 299 349-2 300 044 nt · Forward (+)
ICY_RS12070GCF_000291515#ICY_RS12070
HKClassicCurrent focus
2 300 034-2 301 191 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291515#ICY_RS12070The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2565170
Simplified PFAM architecture for HKOC_2565170
PFAM domain coverage: 174 / 385 aa (45.2%)
1 aa385 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-226] | HATPase_c[274-380]
- Domain count: 2
- Matched identifier: HKOC_2565170
- Positioned domains: HisKA 160-226 ; HATPase_c 274-380
Cluster members and taxonomy
Representative gene: GCF_000291515#ICY_RS12070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 181 · GCF_000291515
AssemblyBaci_cere_BAG2X1-3_G13211_V1 · Scaffoldhaploid
Genome composition5 250 571 bp · 35,5% GCBacillus cereus BAG2X1-3
Signal transduction countsGenes 98 · HK 53 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key