1 HisKA#1
435-501 aa · 67 aa · 6.6% of protein
Raw token
HisKA:435:0.0000000000013:501:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICY_RS03090
Histidine kinase, Hybrid
Bacillus cereus BAG2X1-3 · GCF_000291515
ClassHKTypeHybridLength1018 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000291515#ICY_RS03090Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHis_kinase
Protein length1018 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage466 / 1018 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,2 HATPase_c,1 Response_reg,1 His_kinaseSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1018 aa
Domain-by-domain annotation5 items
2 HATPase_c#2
548-658 aa · 111 aa · 10.9% of protein
Raw token
HATPase_c:548:6.4e-35:658:111:1093 Response_reg#3
692-803 aa · 112 aa · 11.0% of protein
Raw token
Response_reg:692:2.03e-30:803:113:1114 His_kinase#4
818-898 aa · 81 aa · 8.0% of protein
Raw token
His_kinase:818:1.42e-24:898:82:805 HATPase_c#5
920-1014 aa · 95 aa · 9.3% of protein
Raw token
HATPase_c:920:0.0000000000000619:1014:101:109- Raw architecture: HisKA:435:0.0000000000013:501:67:64#HATPase_c:548:6.4e-35:658:111:109#Response_reg:692:2.03e-30:803:113:111#His_kinase:818:1.42e-24:898:82:80#HATPase_c:920:0.0000000000000619:1014:101:109
- Domain description: 1 HisKA,2 HATPase_c,1 Response_reg,1 His_kinase
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000291515::NZ_JH791914.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span584891-587947Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICY_00602RefSeq proteinWP_000044275.1
Context group ID
GCF_000291515::NZ_JH791914.1::G00010Context members
ICY_RS03090
Partner locus tags
ICY_RS03090
Partner old locus tags
ICY_00602
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000044275.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICY_RS03090Primary locus identifier stored in the genes table.
Old locus tagICY_00602Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791914.1Sequence record reported by the local genomic context database.
Genomic interval584 891-587 947 nt3 057 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span584 891-587 947 ntGCF_000291515::NZ_JH791914.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291515::NZ_JH791914.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791914.1All displayed genes belong to this local TCS context.
Neighborhood span584 891-587 947 nt3 057 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
584 891 nt587 947 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ICY_RS03090GCF_000291515#ICY_RS03090
HKHybridCurrent focus
584 891-587 947 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291515#ICY_RS03090The current gene is the representative for this cluster.
PFAM architecture7TMR-DISM_7TM + HisKA + HATPase_c + Response_reg + His_kinase + HATPase_c6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0278298
Simplified PFAM architecture for HKOC_0278298
PFAM domain coverage: 663 / 1018 aa (65.1%)
1 aa1018 aa
7TMR-DISM_7TMHisKAHATPase_cResponse_regHis_kinaseHATPase_c
- Simplified architecture: 7TMR-DISM_7TM + HisKA + HATPase_c + Response_reg + His_kinase + HATPase_c
- Raw architecture: 7TMR-DISM_7TM[208-408] | HisKA[436-501] | HATPase_c[549-657] | Response_reg[692-802] | His_kinase[821-898] | HATPase_c[917-1014]
- Domain count: 6
- Matched identifier: HKOC_0278298
- Positioned domains: 7TMR-DISM_7TM 208-408 ; HisKA 436-501 ; HATPase_c 549-657 ; Response_reg 692-802 ; His_kinase 821-898 ; HATPase_c 917-1014
Cluster members and taxonomy
Representative gene: GCF_000291515#ICY_RS03090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 181 · GCF_000291515
AssemblyBaci_cere_BAG2X1-3_G13211_V1 · Scaffoldhaploid
Genome composition5 250 571 bp · 35,5% GCBacillus cereus BAG2X1-3
Signal transduction countsGenes 98 · HK 53 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key