1 Response_reg#1
4-113 aa · 110 aa · 30.4% of protein
Raw token
Response_reg:4:1.61e-23:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICY_RS03075
Response regulator OmpR family
Bacillus cereus BAG2X1-3 · GCF_000291515
ClassRRTypeOmpRLength362 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000291515#ICY_RS03075Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 362 aa (49.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-227 aa · 70 aa · 19.3% of protein
Raw token
Trans_reg_C:158:0.000000213:227:72:77- Raw architecture: Response_reg:4:1.61e-23:113:112:111#Trans_reg_C:158:0.000000213:227:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000291515::NZ_JH791914.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span578533-579621Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICY_00599RefSeq proteinWP_001201608.1
Context group ID
GCF_000291515::NZ_JH791914.1::G00009Context members
ICY_RS03075
Partner locus tags
ICY_RS03075
Partner old locus tags
ICY_00599
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001201608.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A8PR52Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A8PR52_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICY_RS03075Primary locus identifier stored in the genes table.
Old locus tagICY_00599Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791914.1Sequence record reported by the local genomic context database.
Genomic interval578 533-579 621 nt1 089 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span578 533-579 621 ntGCF_000291515::NZ_JH791914.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291515::NZ_JH791914.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791914.1All displayed genes belong to this local TCS context.
Neighborhood span578 533-579 621 nt1 089 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
578 533 nt579 621 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ICY_RS03075GCF_000291515#ICY_RS03075
RROmpRCurrent focus
578 533-579 621 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291515#ICY_RS03075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C + BTAD3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0455167
Simplified PFAM architecture for RROC_0455167
PFAM domain coverage: 287 / 362 aa (79.3%)
1 aa362 aa
Response_regTrans_reg_CBTAD
- Simplified architecture: Response_reg + Trans_reg_C + BTAD
- Raw architecture: Response_reg[4-112] | Trans_reg_C[158-227] | BTAD[235-342]
- Domain count: 3
- Matched identifier: RROC_0455167
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 158-227 ; Trans_reg_C 158-227 ; BTAD 235-342 ; BTAD 235-342
Cluster members and taxonomy
Representative gene: GCF_000291515#ICY_RS03075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 181 · GCF_000291515
AssemblyBaci_cere_BAG2X1-3_G13211_V1 · Scaffoldhaploid
Genome composition5 250 571 bp · 35,5% GCBacillus cereus BAG2X1-3
Signal transduction countsGenes 98 · HK 53 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key