1 Response_reg#1
6-113 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:6:7.05e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICW_RS13135
Response regulator OmpR family
Bacillus wiedmannii · GCF_000291495
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291495#ICW_RS13135Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-217 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:145:1.06e-16:217:76:77- Raw architecture: Response_reg:6:7.05e-28:113:111:111#Trans_reg_C:145:1.06e-16:217:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291495::NZ_JH791910.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2542357-2544020Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICW_02625RefSeq proteinWP_000870355.1
Context group ID
GCF_000291495::NZ_JH791910.1::G00030Context members
ICW_RS13135ICW_RS13140
Partner locus tags
ICW_RS13135ICW_RS13140
Partner old locus tags
ICW_02625ICW_02626
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000870355.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A8ETP3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A8ETP3_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICW_RS13135Primary locus identifier stored in the genes table.
Old locus tagICW_02625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791910.1Sequence record reported by the local genomic context database.
Genomic interval2 542 357-2 543 028 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 542 357-2 544 020 ntGCF_000291495::NZ_JH791910.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291495::NZ_JH791910.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791910.1All displayed genes belong to this local TCS context.
Neighborhood span2 542 357-2 544 020 nt1 664 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 542 357 nt2 544 020 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICW_RS13135GCF_000291495#ICW_RS13135
RROmpRCurrent focus
2 542 357-2 543 028 nt · Forward (+)
ICW_RS13140GCF_000291495#ICW_RS13140
HKClassic
2 543 025-2 544 020 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291495#ICW_RS13135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588552
Simplified PFAM architecture for RROC_1588552
PFAM domain coverage: 180 / 223 aa (80.7%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1588552
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_000291495#ICW_RS13135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000291495
AssemblyBaci_cere_BAG2X1-2_G13195_V1 · Scaffoldhaploid
Genome composition5 589 654 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 63 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key