1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:1.54e-23:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IE9_RS06420
Response regulator NarL family
Bacillus cereus BAG4X12-1 · GCF_000291415
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291415#IE9_RS06420Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:4.8e-27:203:58:58- Raw architecture: Response_reg:4:1.54e-23:116:113:111#HTH_LUXR:146:4.8e-27:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291415::NZ_JH791951.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1228611-1230295Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIE9_01207RefSeq proteinWP_000598707.1
Context group ID
GCF_000291415::NZ_JH791951.1::G00017Context members
IE9_RS06415IE9_RS06420
Partner locus tags
IE9_RS06415IE9_RS06420
Partner old locus tags
IE9_01206IE9_01207
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000598707.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6FX48Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6FX48_BACUDDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIE9_RS06420Primary locus identifier stored in the genes table.
Old locus tagIE9_01207Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791951.1Sequence record reported by the local genomic context database.
Genomic interval1 229 663-1 230 295 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 228 611-1 230 295 ntGCF_000291415::NZ_JH791951.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291415::NZ_JH791951.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791951.1All displayed genes belong to this local TCS context.
Neighborhood span1 228 611-1 230 295 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 228 611 nt1 230 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IE9_RS06415GCF_000291415#IE9_RS06415
HKClassic
1 228 611-1 229 666 nt · Forward (+)
IE9_RS06420GCF_000291415#IE9_RS06420
RRNarLCurrent focus
1 229 663-1 230 295 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS07140Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2018841
Simplified PFAM architecture for RROC_2018841
PFAM domain coverage: 169 / 210 aa (80.5%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_2018841
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS07140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 186 · GCF_000291415
AssemblyBaci_cere_BAG4X12-1_G13198_V1 · Scaffoldhaploid
Genome composition5 825 595 bp · 35,0% GCBacillus cereus BAG4X12-1
Signal transduction countsGenes 130 · HK 70 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key