1 HisKA_3#1
177-240 aa · 64 aa · 17.1% of protein
Raw token
HisKA_3:177:8.22e-24:240:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEC_RS22490
Histidine kinase, Classic
Bacillus toyonensis · GCF_000291395
ClassHKTypeClassicLength375 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291395#IEC_RS22490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 375 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
281-366 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:281:0.000000000618:366:104:109- Raw architecture: HisKA_3:177:8.22e-24:240:64:68#HATPase_c:281:0.000000000618:366:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291395::NZ_JH791945.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4385385-4387111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEC_04501RefSeq proteinWP_000570779.1
Context group ID
GCF_000291395::NZ_JH791945.1::G00051Context members
IEC_RS22485IEC_RS22490
Partner locus tags
IEC_RS22485IEC_RS22490
Partner old locus tags
IEC_04500IEC_04501
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000570779.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEC_RS22490Primary locus identifier stored in the genes table.
Old locus tagIEC_04501Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791945.1Sequence record reported by the local genomic context database.
Genomic interval4 385 984-4 387 111 nt1 128 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 385 385-4 387 111 ntGCF_000291395::NZ_JH791945.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291395::NZ_JH791945.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791945.1All displayed genes belong to this local TCS context.
Neighborhood span4 385 385-4 387 111 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 385 385 nt4 387 111 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEC_RS22485GCF_000291395#IEC_RS22485
RRNarL
4 385 385-4 385 987 nt · Reverse (-)
IEC_RS22490GCF_000291395#IEC_RS22490
HKClassicCurrent focus
4 385 984-4 387 111 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291395#IEC_RS22490The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2649540
Simplified PFAM architecture for HKOC_2649540
PFAM domain coverage: 294 / 375 aa (78.4%)
1 aa375 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[3-147] | HisKA_3[177-240] | HATPase_c[279-363]
- Domain count: 3
- Matched identifier: HKOC_2649540
- Positioned domains: DesK_N 3-147 ; HisKA_3 177-240 ; HATPase_c 279-363
Cluster members and taxonomy
Representative gene: GCF_000291395#IEC_RS22490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291395
AssemblyBaci_cere_BAG5O-1_G13200_V1 · Scaffoldhaploid
Genome composition5 884 793 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 113 · HK 62 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key