1 HisKA#1
208-268 aa · 61 aa · 14.6% of protein
Raw token
HisKA:208:0.000000000012:268:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEC_RS13050
Histidine kinase, Classic
Bacillus toyonensis · GCF_000291395
ClassHKTypeClassicLength417 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000291395#IEC_RS13050Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 417 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
313-416 aa · 104 aa · 24.9% of protein
Raw token
HATPase_c:313:2.93e-22:416:107:109- Raw architecture: HisKA:208:0.000000000012:268:61:64#HATPase_c:313:2.93e-22:416:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000291395::NZ_JH791945.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2593119-2594372Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEC_02618RefSeq proteinWP_000513031.1
Context group ID
GCF_000291395::NZ_JH791945.1::G00034Context members
IEC_RS13050
Partner locus tags
IEC_RS13050
Partner old locus tags
IEC_02618
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000513031.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEC_RS13050Primary locus identifier stored in the genes table.
Old locus tagIEC_02618Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791945.1Sequence record reported by the local genomic context database.
Genomic interval2 593 119-2 594 372 nt1 254 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 593 119-2 594 372 ntGCF_000291395::NZ_JH791945.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291395::NZ_JH791945.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791945.1All displayed genes belong to this local TCS context.
Neighborhood span2 593 119-2 594 372 nt1 254 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 593 119 nt2 594 372 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IEC_RS13050GCF_000291395#IEC_RS13050
HKClassicCurrent focus
2 593 119-2 594 372 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291395#IEC_RS13050The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2293623
Simplified PFAM architecture for HKOC_2293623
PFAM domain coverage: 166 / 417 aa (39.8%)
1 aa417 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-269] | HATPase_c[313-416]
- Domain count: 2
- Matched identifier: HKOC_2293623
- Positioned domains: HisKA 208-269 ; HATPase_c 313-416
Cluster members and taxonomy
Representative gene: GCF_000291395#IEC_RS13050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291395
AssemblyBaci_cere_BAG5O-1_G13200_V1 · Scaffoldhaploid
Genome composition5 884 793 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 113 · HK 62 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key