1 HAMP#1
176-244 aa · 69 aa · 11.7% of protein
Raw token
HAMP:176:0.00000000000000779:244:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEC_RS03615
Histidine kinase, Classic
Bacillus toyonensis · GCF_000291395
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291395#IEC_RS03615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage348 / 591 aa (58.9%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation4 items
2 PAS#2
255-355 aa · 101 aa · 17.1% of protein
Raw token
PAS:255:0.00000204:355:113:1133 HisKA#3
364-431 aa · 68 aa · 11.5% of protein
Raw token
HisKA:364:4.6e-18:431:68:644 HATPase_c#4
478-587 aa · 110 aa · 18.6% of protein
Raw token
HATPase_c:478:7.19e-35:587:110:109- Raw architecture: HAMP:176:0.00000000000000779:244:69:69#PAS:255:0.00000204:355:113:113#HisKA:364:4.6e-18:431:68:64#HATPase_c:478:7.19e-35:587:110:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291395::NZ_JH791945.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span673197-675688Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEC_00704RefSeq proteinWP_000964658.1
Context group ID
GCF_000291395::NZ_JH791945.1::G00012Context members
IEC_RS03610IEC_RS03615
Partner locus tags
IEC_RS03610IEC_RS03615
Partner old locus tags
IEC_00703IEC_00704
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000964658.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5C246Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5C246_9BACIDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEC_RS03615Primary locus identifier stored in the genes table.
Old locus tagIEC_00704Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791945.1Sequence record reported by the local genomic context database.
Genomic interval673 913-675 688 nt1 776 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span673 197-675 688 ntGCF_000291395::NZ_JH791945.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291395::NZ_JH791945.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791945.1All displayed genes belong to this local TCS context.
Neighborhood span673 197-675 688 nt2 492 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
673 197 nt675 688 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEC_RS03610GCF_000291395#IEC_RS03610
RROmpR
673 197-673 913 nt · Forward (+)
IEC_RS03615GCF_000291395#IEC_RS03615
HKClassicCurrent focus
673 913-675 688 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291015#IC9_RS19820Use this link to inspect the representative gene detail.
PFAM architectureHisK_sensor + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1105236
Simplified PFAM architecture for HKOC_1105236
PFAM domain coverage: 357 / 591 aa (60.4%)
1 aa591 aa
HisK_sensorHAMPHisKAHATPase_c
- Simplified architecture: HisK_sensor + HAMP + HisKA + HATPase_c
- Raw architecture: HisK_sensor[38-163] | HAMP[193-244] | HisKA[364-431] | HATPase_c[478-588]
- Domain count: 4
- Matched identifier: HKOC_1105236
- Positioned domains: HisK_sensor 38-163 ; HAMP 193-244 ; HisKA 364-431 ; HATPase_c 478-588
Cluster members and taxonomy
Representative gene: GCF_000291015#IC9_RS19820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291395
AssemblyBaci_cere_BAG5O-1_G13200_V1 · Scaffoldhaploid
Genome composition5 884 793 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 113 · HK 62 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key