1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:1.21e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEI_RS00435
Response regulator OmpR family
Bacillus wiedmannii · GCF_000291375
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291375#IEI_RS00435Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 229 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.9% of protein
Raw token
Trans_reg_C:153:6.45e-29:225:76:77- Raw architecture: Response_reg:5:1.21e-35:114:111:111#Trans_reg_C:153:6.45e-29:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291375::NZ_JH791975.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71164-73700Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEI_00066RefSeq proteinWP_001097099.1
Context group ID
GCF_000291375::NZ_JH791975.1::G00004Context members
IEI_RS00435IEI_RS00440
Partner locus tags
IEI_RS00435IEI_RS00440
Partner old locus tags
IEI_00066IEI_00067
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001097099.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q5X119Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q5X119_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEI_RS00435Primary locus identifier stored in the genes table.
Old locus tagIEI_00066Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791975.1Sequence record reported by the local genomic context database.
Genomic interval71 164-71 853 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 164-73 700 ntGCF_000291375::NZ_JH791975.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291375::NZ_JH791975.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791975.1All displayed genes belong to this local TCS context.
Neighborhood span71 164-73 700 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 164 nt73 700 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEI_RS00435GCF_000291375#IEI_RS00435
RROmpRCurrent focus
71 164-71 853 nt · Forward (+)
IEI_RS00440GCF_000291375#IEI_RS00440
HKClassic
71 850-73 700 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291375#IEI_RS00435The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1248199
Simplified PFAM architecture for RROC_1248199
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1248199
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000291375#IEI_RS00435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000291375
AssemblyBaci_cere_BAG5X2-1_G13204_V1 · Scaffoldhaploid
Genome composition5 855 291 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key