1 HAMP#1
63-130 aa · 68 aa · 18.6% of protein
Raw token
HAMP:63:0.00000357:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEI_RS00240
Histidine kinase, Classic
Bacillus wiedmannii · GCF_000291375
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291375#IEI_RS00240Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 365 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa365 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.6% of protein
Raw token
HisKA:141:0.00000000000191:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.7% of protein
Raw token
HATPase_c:253:2.5e-26:364:113:109- Raw architecture: HAMP:63:0.00000357:130:68:69#HisKA:141:0.00000000000191:208:68:64#HATPase_c:253:2.5e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291375::NZ_JH791975.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32143-33931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEI_00025RefSeq proteinWP_001085281.1
Context group ID
GCF_000291375::NZ_JH791975.1::G00001Context members
IEI_RS00235IEI_RS00240
Partner locus tags
IEI_RS00235IEI_RS00240
Partner old locus tags
IEI_00024IEI_00025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001085281.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEI_RS00240Primary locus identifier stored in the genes table.
Old locus tagIEI_00025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791975.1Sequence record reported by the local genomic context database.
Genomic interval32 834-33 931 nt1 098 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 143-33 931 ntGCF_000291375::NZ_JH791975.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291375::NZ_JH791975.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791975.1All displayed genes belong to this local TCS context.
Neighborhood span32 143-33 931 nt1 789 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 143 nt33 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEI_RS00235GCF_000291375#IEI_RS00235
RROmpR
32 143-32 841 nt · Forward (+)
IEI_RS00240GCF_000291375#IEI_RS00240
HKClassicCurrent focus
32 834-33 931 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291375#IEI_RS00240The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2718442
Simplified PFAM architecture for HKOC_2718442
PFAM domain coverage: 177 / 365 aa (48.5%)
1 aa365 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[142-207] | HATPase_c[253-363]
- Domain count: 2
- Matched identifier: HKOC_2718442
- Positioned domains: HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_000291375#IEI_RS00240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000291375
AssemblyBaci_cere_BAG5X2-1_G13204_V1 · Scaffoldhaploid
Genome composition5 855 291 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key