1 HisKA_3#1
403-467 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:403:2.38e-18:467:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEW_RS02540
Histidine kinase, Classic
Bacillus mycoides · GCF_000291335
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291335#IEW_RS02540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 610 aa (24.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
517-603 aa · 87 aa · 14.3% of protein
Raw token
HATPase_c:517:0.000000000000112:603:97:109- Raw architecture: HisKA_3:403:2.38e-18:467:65:68#HATPase_c:517:0.000000000000112:603:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291335::NZ_JH792011.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span539376-541851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEW_00480RefSeq proteinWP_002125196.1
Context group ID
GCF_000291335::NZ_JH792011.1::G00010Context members
IEW_RS02540IEW_RS02545
Partner locus tags
IEW_RS02540IEW_RS02545
Partner old locus tags
IEW_00480IEW_00481
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002125196.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TP93Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TP93_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEW_RS02540Primary locus identifier stored in the genes table.
Old locus tagIEW_00480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792011.1Sequence record reported by the local genomic context database.
Genomic interval539 376-541 208 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span539 376-541 851 ntGCF_000291335::NZ_JH792011.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291335::NZ_JH792011.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792011.1All displayed genes belong to this local TCS context.
Neighborhood span539 376-541 851 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
539 376 nt541 851 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEW_RS02540GCF_000291335#IEW_RS02540
HKClassicCurrent focus
539 376-541 208 nt · Forward (+)
IEW_RS02545GCF_000291335#IEW_RS02545
RRNarL
541 210-541 851 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02845Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1004458
Simplified PFAM architecture for HKOC_1004458
PFAM domain coverage: 157 / 610 aa (25.7%)
1 aa610 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[403-467] | HATPase_c[513-604]
- Domain count: 2
- Matched identifier: HKOC_1004458
- Positioned domains: HisKA_3 403-467 ; HATPase_c 513-604
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000291335
AssemblyBaci_cere_CER057_V1 · Scaffoldhaploid
Genome composition5 628 380 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key