1 sCache_like#1
35-149 aa · 115 aa · 19.6% of protein
Raw token
sCache_like:35:1.1e-25:149:117:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEY_RS04890
Histidine kinase, Classic
Bacillus mycoides · GCF_000291315
ClassHKTypeClassicLength587 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291315#IEY_RS04890Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPASHisKAHATPase_c
Protein length587 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage470 / 587 aa (80.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa587 aa
Domain-by-domain annotation5 items
2 HAMP#2
165-234 aa · 70 aa · 11.9% of protein
Raw token
HAMP:165:0.00000000000819:234:70:693 PAS#3
245-351 aa · 107 aa · 18.2% of protein
Raw token
PAS:245:0.0000000000000279:351:112:1134 HisKA#4
360-427 aa · 68 aa · 11.6% of protein
Raw token
HisKA:360:1.47e-21:427:68:645 HATPase_c#5
472-581 aa · 110 aa · 18.7% of protein
Raw token
HATPase_c:472:6.99e-36:581:110:109- Raw architecture: sCache_like:35:1.1e-25:149:117:114#HAMP:165:0.00000000000819:234:70:69#PAS:245:0.0000000000000279:351:112:113#HisKA:360:1.47e-21:427:68:64#HATPase_c:472:6.99e-36:581:110:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291315::NZ_JH791991.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span941336-943811Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEY_00958RefSeq proteinWP_002129354.1
Context group ID
GCF_000291315::NZ_JH791991.1::G00015Context members
IEY_RS04885IEY_RS04890
Partner locus tags
IEY_RS04885IEY_RS04890
Partner old locus tags
IEY_00957IEY_00958
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002129354.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEY_RS04890Primary locus identifier stored in the genes table.
Old locus tagIEY_00958Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791991.1Sequence record reported by the local genomic context database.
Genomic interval942 048-943 811 nt1 764 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span941 336-943 811 ntGCF_000291315::NZ_JH791991.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291315::NZ_JH791991.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791991.1All displayed genes belong to this local TCS context.
Neighborhood span941 336-943 811 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
941 336 nt943 811 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEY_RS04885GCF_000291315#IEY_RS04885
RROmpR
941 336-942 055 nt · Forward (+)
IEY_RS04890GCF_000291315#IEY_RS04890
HKClassicCurrent focus
942 048-943 811 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291315#IEY_RS04890The current gene is the representative for this cluster.
PFAM architecturesCache_like + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1125863
Simplified PFAM architecture for HKOC_1125863
PFAM domain coverage: 449 / 587 aa (76.5%)
1 aa587 aa
sCache_likeHAMPPASHisKAHATPase_c
- Simplified architecture: sCache_like + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: sCache_like[33-149] | HAMP[188-234] | PAS[245-351] | HisKA[360-426] | HATPase_c[472-582]
- Domain count: 5
- Matched identifier: HKOC_1125863
- Positioned domains: sCache_like 33-149 ; HAMP 188-234 ; PAS 245-351 ; HisKA 360-426 ; HATPase_c 472-582
Cluster members and taxonomy
Representative gene: GCF_000291315#IEY_RS04890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000291315
AssemblyBaci_cere_CER074_V1 · Scaffoldhaploid
Genome composition5 603 560 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key