1 Response_reg#1
6-116 aa · 111 aa · 52.1% of protein
Raw token
Response_reg:6:1.23e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIA_RS10420
Response regulator NarL family
Bacillus cereus VD014 · GCF_000291255
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291255#IIA_RS10420Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 213 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:151:2.83e-24:205:55:58- Raw architecture: Response_reg:6:1.23e-37:116:111:111#HTH_LUXR:151:2.83e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291255::NZ_JH792025.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2032916-2034669Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIA_02024RefSeq proteinWP_000694627.1
Context group ID
GCF_000291255::NZ_JH792025.1::G00029Context members
IIA_RS10415IIA_RS10420
Partner locus tags
IIA_RS10415IIA_RS10420
Partner old locus tags
IIA_02023IIA_02024
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694627.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W7UVT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W7UVT1_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIA_RS10420Primary locus identifier stored in the genes table.
Old locus tagIIA_02024Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792025.1Sequence record reported by the local genomic context database.
Genomic interval2 034 028-2 034 669 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 032 916-2 034 669 ntGCF_000291255::NZ_JH792025.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291255::NZ_JH792025.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792025.1All displayed genes belong to this local TCS context.
Neighborhood span2 032 916-2 034 669 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 032 916 nt2 034 669 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIA_RS10415GCF_000291255#IIA_RS10415
HKClassic
2 032 916-2 034 013 nt · Forward (+)
IIA_RS10420GCF_000291255#IIA_RS10420
RRNarLCurrent focus
2 034 028-2 034 669 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161675#BTHUR0011_RS10400Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962726
Simplified PFAM architecture for RROC_1962726
PFAM domain coverage: 167 / 213 aa (78.4%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1962726
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_000161675#BTHUR0011_RS10400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 223 · GCF_000291255
AssemblyBaci_cere_VD014_V1 · Scaffoldhaploid
Genome composition6 204 183 bp · 34,5% GCBacillus cereus VD014
Signal transduction countsGenes 121 · HK 64 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key