1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.00000000000183:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIA_RS08390
Histidine kinase, Classic
Bacillus cereus VD014 · GCF_000291255
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291255#IIA_RS08390Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 355 aa (67.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-191 aa · 61 aa · 17.2% of protein
Raw token
HisKA:131:0.00000000000138:191:61:643 HATPase_c#3
242-350 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:242:1.38e-21:350:110:109- Raw architecture: HAMP:50:0.00000000000183:119:70:69#HisKA:131:0.00000000000138:191:61:64#HATPase_c:242:1.38e-21:350:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291255::NZ_JH792025.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1639850-1641605Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIA_01611RefSeq proteinWP_000695288.1
Context group ID
GCF_000291255::NZ_JH792025.1::G00026Context members
IIA_RS08385IIA_RS08390
Partner locus tags
IIA_RS08385IIA_RS08390
Partner old locus tags
IIA_01610IIA_01611
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000695288.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W5KAH9Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W5KAH9_BACC8Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIA_RS08390Primary locus identifier stored in the genes table.
Old locus tagIIA_01611Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792025.1Sequence record reported by the local genomic context database.
Genomic interval1 640 538-1 641 605 nt1 068 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 639 850-1 641 605 ntGCF_000291255::NZ_JH792025.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291255::NZ_JH792025.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792025.1All displayed genes belong to this local TCS context.
Neighborhood span1 639 850-1 641 605 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 639 850 nt1 641 605 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIA_RS08385GCF_000291255#IIA_RS08385
RROmpR
1 639 850-1 640 548 nt · Forward (+)
IIA_RS08390GCF_000291255#IIA_RS08390
HKClassicCurrent focus
1 640 538-1 641 605 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291255#IIA_RS08390The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775132
Simplified PFAM architecture for HKOC_2775132
PFAM domain coverage: 223 / 355 aa (62.8%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[131-192] | HATPase_c[244-351]
- Domain count: 3
- Matched identifier: HKOC_2775132
- Positioned domains: HAMP 67-119 ; HisKA 131-192 ; HATPase_c 244-351
Cluster members and taxonomy
Representative gene: GCF_000291255#IIA_RS08390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 223 · GCF_000291255
AssemblyBaci_cere_VD014_V1 · Scaffoldhaploid
Genome composition6 204 183 bp · 34,5% GCBacillus cereus VD014
Signal transduction countsGenes 121 · HK 64 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key