1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:1.59e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIA_RS08385
Response regulator OmpR family
Bacillus cereus VD014 · GCF_000291255
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291255#IIA_RS08385Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:154:1.02e-30:230:77:77- Raw architecture: Response_reg:6:1.59e-36:115:111:111#Trans_reg_C:154:1.02e-30:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291255::NZ_JH792025.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1639850-1641605Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIA_01610RefSeq proteinWP_000414553.1
Context group ID
GCF_000291255::NZ_JH792025.1::G00026Context members
IIA_RS08385IIA_RS08390
Partner locus tags
IIA_RS08385IIA_RS08390
Partner old locus tags
IIA_01610IIA_01611
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000414553.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W5KAA8Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W5KAA8_BACC8Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIA_RS08385Primary locus identifier stored in the genes table.
Old locus tagIIA_01610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792025.1Sequence record reported by the local genomic context database.
Genomic interval1 639 850-1 640 548 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 639 850-1 641 605 ntGCF_000291255::NZ_JH792025.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291255::NZ_JH792025.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792025.1All displayed genes belong to this local TCS context.
Neighborhood span1 639 850-1 641 605 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 639 850 nt1 641 605 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIA_RS08385GCF_000291255#IIA_RS08385
RROmpRCurrent focus
1 639 850-1 640 548 nt · Forward (+)
IIA_RS08390GCF_000291255#IIA_RS08390
HKClassic
1 640 538-1 641 605 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290775#IK7_RS19200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120654
Simplified PFAM architecture for RROC_1120654
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1120654
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000290775#IK7_RS19200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 223 · GCF_000291255
AssemblyBaci_cere_VD014_V1 · Scaffoldhaploid
Genome composition6 204 183 bp · 34,5% GCBacillus cereus VD014
Signal transduction countsGenes 121 · HK 64 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key