1 PAS_4#1
216-304 aa · 89 aa · 11.2% of protein
Raw token
PAS_4:216:0.000000758:304:100:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II5_RS09455
Histidine kinase, Classic
Bacillus cereus MSX-A1 · GCF_000291195
ClassHKTypeClassicLength795 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000291195#II5_RS09455Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_9HisKAHATPase_c
Protein length795 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage460 / 795 aa (57.9%)Merged over positioned domains only.
Domain description2 PAS_4,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa795 aa
Domain-by-domain annotation5 items
2 PAS_4#2
326-431 aa · 106 aa · 13.3% of protein
Raw token
PAS_4:326:1.49e-18:431:107:1103 PAS_9#3
461-563 aa · 103 aa · 13.0% of protein
Raw token
PAS_9:461:0.000000000158:563:105:1024 HisKA#4
581-641 aa · 61 aa · 7.7% of protein
Raw token
HisKA:581:0.00000000000824:641:61:645 HATPase_c#5
689-789 aa · 101 aa · 12.7% of protein
Raw token
HATPase_c:689:3.54e-28:789:104:109- Raw architecture: PAS_4:216:0.000000758:304:100:110#PAS_4:326:1.49e-18:431:107:110#PAS_9:461:0.000000000158:563:105:102#HisKA:581:0.00000000000824:641:61:64#HATPase_c:689:3.54e-28:789:104:109
- Domain description: 2 PAS_4,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000291195::NZ_JH792104.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1814898-1817285Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII5_01898RefSeq proteinWP_085962522.1
Context group ID
GCF_000291195::NZ_JH792104.1::G00018Context members
II5_RS09455
Partner locus tags
II5_RS09455
Partner old locus tags
II5_01898
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_085962522.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII5_RS09455Primary locus identifier stored in the genes table.
Old locus tagII5_01898Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792104.1Sequence record reported by the local genomic context database.
Genomic interval1 814 898-1 817 285 nt2 388 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 814 898-1 817 285 ntGCF_000291195::NZ_JH792104.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291195::NZ_JH792104.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792104.1All displayed genes belong to this local TCS context.
Neighborhood span1 814 898-1 817 285 nt2 388 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 814 898 nt1 817 285 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
II5_RS09455GCF_000291195#II5_RS09455
HKClassicCurrent focus
1 814 898-1 817 285 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291195#II5_RS09455The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0564986
Simplified PFAM architecture for HKOC_0564986
PFAM domain coverage: 545 / 795 aa (68.6%)
1 aa795 aa
5TM-5TMR_LYTPAS_4PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[32-130] | PAS_4[224-304] | PAS_4[326-431] | PAS_9[467-563] | HisKA[581-639] | HATPase_c[688-790]
- Domain count: 6
- Matched identifier: HKOC_0564986
- Positioned domains: 5TM-5TMR_LYT 32-130 ; PAS_4 224-304 ; PAS_4 326-431 ; PAS_9 467-563 ; HisKA 581-639 ; HATPase_c 688-790
Cluster members and taxonomy
Representative gene: GCF_000291195#II5_RS09455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 220 · GCF_000291195
AssemblyBaci_cere_MSX-A1_V1 · Scaffoldhaploid
Genome composition6 066 700 bp · 35,0% GCBacillus cereus MSX-A1
Signal transduction countsGenes 103 · HK 55 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key