1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:0.00000000000000121:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGC_RS13215
Histidine kinase, Classic
Bacillus cereus HuA4-10 · GCF_000291075
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291075#IGC_RS13215Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 458 aa (47.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000175:303:61:643 HATPase_c#3
349-437 aa · 89 aa · 19.4% of protein
Raw token
HATPase_c:349:1.78e-17:437:92:109- Raw architecture: HAMP:165:0.00000000000000121:232:68:69#HisKA:244:0.00000000000175:303:61:64#HATPase_c:349:1.78e-17:437:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291075::NZ_JH792148.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2594148-2596164Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGC_02653RefSeq proteinWP_002147283.1
Context group ID
GCF_000291075::NZ_JH792148.1::G00027Context members
IGC_RS13210IGC_RS13215
Partner locus tags
IGC_RS13210IGC_RS13215
Partner old locus tags
IGC_02652IGC_02653
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002147283.1Primary protein accession used for annex mappings.
UniProt accessionJ8AAU1Primary UniProt accession resolved in the annex database.
UniProt IDJ8AAU1_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGC_RS13215Primary locus identifier stored in the genes table.
Old locus tagIGC_02653Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792148.1Sequence record reported by the local genomic context database.
Genomic interval2 594 788-2 596 164 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 594 148-2 596 164 ntGCF_000291075::NZ_JH792148.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291075::NZ_JH792148.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792148.1All displayed genes belong to this local TCS context.
Neighborhood span2 594 148-2 596 164 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 594 148 nt2 596 164 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGC_RS13210GCF_000291075#IGC_RS13210
RROmpR
2 594 148-2 594 795 nt · Forward (+)
IGC_RS13215GCF_000291075#IGC_RS13215
HKClassicCurrent focus
2 594 788-2 596 164 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291075#IGC_RS13215The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858743
Simplified PFAM architecture for HKOC_1858743
PFAM domain coverage: 200 / 458 aa (43.7%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-439]
- Domain count: 3
- Matched identifier: HKOC_1858743
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-439
Cluster members and taxonomy
Representative gene: GCF_000291075#IGC_RS13215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 206 · GCF_000291075
AssemblyBaci_cere_HuA4-10_V1 · Scaffoldhaploid
Genome composition5 803 300 bp · 35,0% GCBacillus cereus HuA4-10
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key