1 HAMP#1
153-224 aa · 72 aa · 15.8% of protein
Raw token
HAMP:153:0.0000000000001:224:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGC_RS11795
Histidine kinase, Classic
Bacillus cereus HuA4-10 · GCF_000291075
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291075#IGC_RS11795Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 455 aa (54.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-294 aa · 64 aa · 14.1% of protein
Raw token
HisKA:231:0.000000000000437:294:64:643 HATPase_c#3
340-453 aa · 114 aa · 25.1% of protein
Raw token
HATPase_c:340:8.1e-29:453:114:109- Raw architecture: HAMP:153:0.0000000000001:224:72:69#HisKA:231:0.000000000000437:294:64:64#HATPase_c:340:8.1e-29:453:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291075::NZ_JH792148.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2317659-2319697Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGC_02362RefSeq proteinWP_002146798.1
Context group ID
GCF_000291075::NZ_JH792148.1::G00026Context members
IGC_RS11790IGC_RS11795
Partner locus tags
IGC_RS11790IGC_RS11795
Partner old locus tags
IGC_02361IGC_02362
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002146798.1Primary protein accession used for annex mappings.
UniProt accessionJ8DVW6Primary UniProt accession resolved in the annex database.
UniProt IDJ8DVW6_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGC_RS11795Primary locus identifier stored in the genes table.
Old locus tagIGC_02362Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792148.1Sequence record reported by the local genomic context database.
Genomic interval2 318 330-2 319 697 nt1 368 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 317 659-2 319 697 ntGCF_000291075::NZ_JH792148.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291075::NZ_JH792148.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792148.1All displayed genes belong to this local TCS context.
Neighborhood span2 317 659-2 319 697 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 317 659 nt2 319 697 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGC_RS11790GCF_000291075#IGC_RS11790
RROmpR
2 317 659-2 318 333 nt · Forward (+)
IGC_RS11795GCF_000291075#IGC_RS11795
HKClassicCurrent focus
2 318 330-2 319 697 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291075#IGC_RS11795The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1899835
Simplified PFAM architecture for HKOC_1899835
PFAM domain coverage: 232 / 455 aa (51.0%)
1 aa455 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[169-223] | HisKA[230-294] | HATPase_c[341-452]
- Domain count: 3
- Matched identifier: HKOC_1899835
- Positioned domains: HAMP 169-223 ; HisKA 230-294 ; HATPase_c 341-452
Cluster members and taxonomy
Representative gene: GCF_000291075#IGC_RS11795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 206 · GCF_000291075
AssemblyBaci_cere_HuA4-10_V1 · Scaffoldhaploid
Genome composition5 803 300 bp · 35,0% GCBacillus cereus HuA4-10
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key