1 Response_reg#1
4-116 aa · 113 aa · 53.3% of protein
Raw token
Response_reg:4:1.24e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGC_RS03825
Response regulator NarL family
Bacillus cereus HuA4-10 · GCF_000291075
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291075#IGC_RS03825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 212 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-203 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:149:2e-24:203:55:58- Raw architecture: Response_reg:4:1.24e-33:116:113:111#HTH_LUXR:149:2e-24:203:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291075::NZ_JH792148.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span755394-757866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGC_00734RefSeq proteinWP_002123238.1
Context group ID
GCF_000291075::NZ_JH792148.1::G00015Context members
IGC_RS03820IGC_RS03825
Partner locus tags
IGC_RS03820IGC_RS03825
Partner old locus tags
IGC_00733IGC_00734
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002123238.1Primary protein accession used for annex mappings.
UniProt accessionJ8EBA1Primary UniProt accession resolved in the annex database.
UniProt IDJ8EBA1_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGC_RS03825Primary locus identifier stored in the genes table.
Old locus tagIGC_00734Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792148.1Sequence record reported by the local genomic context database.
Genomic interval757 228-757 866 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span755 394-757 866 ntGCF_000291075::NZ_JH792148.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291075::NZ_JH792148.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792148.1All displayed genes belong to this local TCS context.
Neighborhood span755 394-757 866 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
755 394 nt757 866 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGC_RS03820GCF_000291075#IGC_RS03820
HKClassic
755 394-757 253 nt · Forward (+)
IGC_RS03825GCF_000291075#IGC_RS03825
RRNarLCurrent focus
757 228-757 866 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291075#IGC_RS03825The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1986447
Simplified PFAM architecture for RROC_1986447
PFAM domain coverage: 169 / 212 aa (79.7%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_1986447
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000291075#IGC_RS03825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 206 · GCF_000291075
AssemblyBaci_cere_HuA4-10_V1 · Scaffoldhaploid
Genome composition5 803 300 bp · 35,0% GCBacillus cereus HuA4-10
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key