1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:2.33e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGC_RS03485
Response regulator OmpR family
Bacillus cereus HuA4-10 · GCF_000291075
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291075#IGC_RS03485Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:1.62e-34:229:77:77- Raw architecture: Response_reg:6:2.33e-35:115:111:111#Trans_reg_C:153:1.62e-34:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291075::NZ_JH792148.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span698286-700479Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGC_00665RefSeq proteinWP_002145193.1
Context group ID
GCF_000291075::NZ_JH792148.1::G00012Context members
IGC_RS03485IGC_RS03490
Partner locus tags
IGC_RS03485IGC_RS03490
Partner old locus tags
IGC_00665IGC_00666
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002145193.1Primary protein accession used for annex mappings.
UniProt accessionJ8EBA4Primary UniProt accession resolved in the annex database.
UniProt IDJ8EBA4_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGC_RS03485Primary locus identifier stored in the genes table.
Old locus tagIGC_00665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792148.1Sequence record reported by the local genomic context database.
Genomic interval698 286-698 987 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span698 286-700 479 ntGCF_000291075::NZ_JH792148.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291075::NZ_JH792148.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792148.1All displayed genes belong to this local TCS context.
Neighborhood span698 286-700 479 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
698 286 nt700 479 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGC_RS03485GCF_000291075#IGC_RS03485
RROmpRCurrent focus
698 286-698 987 nt · Forward (+)
IGC_RS03490GCF_000291075#IGC_RS03490
HKClassic
698 971-700 479 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291075#IGC_RS03485The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081720
Simplified PFAM architecture for RROC_1081720
PFAM domain coverage: 184 / 233 aa (79.0%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1081720
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000291075#IGC_RS03485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 206 · GCF_000291075
AssemblyBaci_cere_HuA4-10_V1 · Scaffoldhaploid
Genome composition5 803 300 bp · 35,0% GCBacillus cereus HuA4-10
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key