1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:2.8e-22:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGC_RS02165
Response regulator OmpR family
Bacillus cereus HuA4-10 · GCF_000291075
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000291075#IGC_RS02165Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:148:2.4e-29:223:77:77- Raw architecture: Response_reg:4:2.8e-22:113:111:111#Trans_reg_C:148:2.4e-29:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000291075::NZ_JH792148.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span458318-458995Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGC_00425RefSeq proteinWP_002068199.1
Context group ID
GCF_000291075::NZ_JH792148.1::G00008Context members
IGC_RS02165
Partner locus tags
IGC_RS02165
Partner old locus tags
IGC_00425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002068199.1Primary protein accession used for annex mappings.
UniProt accessionC2Y1I3Primary UniProt accession resolved in the annex database.
UniProt IDC2Y1I3_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGC_RS02165Primary locus identifier stored in the genes table.
Old locus tagIGC_00425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792148.1Sequence record reported by the local genomic context database.
Genomic interval458 318-458 995 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span458 318-458 995 ntGCF_000291075::NZ_JH792148.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291075::NZ_JH792148.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792148.1All displayed genes belong to this local TCS context.
Neighborhood span458 318-458 995 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
458 318 nt458 995 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IGC_RS02165GCF_000291075#IGC_RS02165
RROmpRCurrent focus
458 318-458 995 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS23940Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463384
Simplified PFAM architecture for RROC_1463384
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1463384
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS23940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 206 · GCF_000291075
AssemblyBaci_cere_HuA4-10_V1 · Scaffoldhaploid
Genome composition5 803 300 bp · 35,0% GCBacillus cereus HuA4-10
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key