1 Response_reg#1
6-120 aa · 115 aa · 43.6% of protein
Raw token
Response_reg:6:2.47e-28:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICE_RS16910
Response regulator Spo0A family
Bacillus cereus BAG1X1-2 · GCF_000291035
ClassRRTypeSpo0ALength264 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000291035#ICE_RS16910Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length264 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 264 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa264 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
154-257 aa · 104 aa · 39.4% of protein
Raw token
Spo0A_C:154:5.82e-66:257:104:104- Raw architecture: Response_reg:6:2.47e-28:120:115:111#Spo0A_C:154:5.82e-66:257:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000291035::NZ_JH792222.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3379965-3380759Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICE_03422RefSeq proteinWP_033657527.1
Context group ID
GCF_000291035::NZ_JH792222.1::G00037Context members
ICE_RS16910
Partner locus tags
ICE_RS16910
Partner old locus tags
ICE_03422
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033657527.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICE_RS16910Primary locus identifier stored in the genes table.
Old locus tagICE_03422Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792222.1Sequence record reported by the local genomic context database.
Genomic interval3 379 965-3 380 759 nt795 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 379 965-3 380 759 ntGCF_000291035::NZ_JH792222.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291035::NZ_JH792222.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792222.1All displayed genes belong to this local TCS context.
Neighborhood span3 379 965-3 380 759 nt795 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 379 965 nt3 380 759 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ICE_RS16910GCF_000291035#ICE_RS16910
RRSpo0ACurrent focus
3 379 965-3 380 759 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS16910The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0634506
Simplified PFAM architecture for RROC_0634506
PFAM domain coverage: 219 / 264 aa (83.0%)
1 aa264 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[154-257]
- Domain count: 2
- Matched identifier: RROC_0634506
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 154-257 ; Spo0A_C 154-257
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS16910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 171 · GCF_000291035
AssemblyBaci_cere_BAG1X1-2_G13151_V1 · Scaffoldhaploid
Genome composition5 856 198 bp · 35,0% GCBacillus cereus BAG1X1-2
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key