1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:8.34e-16:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC9_RS13445
Histidine kinase, Classic
Bacillus toyonensis · GCF_000291015
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291015#IC9_RS13445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 458 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.000000000000616:303:61:643 HATPase_c#3
349-448 aa · 100 aa · 21.8% of protein
Raw token
HATPase_c:349:1.53e-16:448:103:109- Raw architecture: HAMP:165:8.34e-16:232:68:69#HisKA:244:0.000000000000616:303:61:64#HATPase_c:349:1.53e-16:448:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291015::NZ_JH792321.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2589815-2591831Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC9_02684RefSeq proteinWP_001037230.1
Context group ID
GCF_000291015::NZ_JH792321.1::G00026Context members
IC9_RS13440IC9_RS13445
Partner locus tags
IC9_RS13440IC9_RS13445
Partner old locus tags
IC9_02683IC9_02684
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001037230.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36STW4Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36STW4_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC9_RS13445Primary locus identifier stored in the genes table.
Old locus tagIC9_02684Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792321.1Sequence record reported by the local genomic context database.
Genomic interval2 590 455-2 591 831 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 589 815-2 591 831 ntGCF_000291015::NZ_JH792321.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291015::NZ_JH792321.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792321.1All displayed genes belong to this local TCS context.
Neighborhood span2 589 815-2 591 831 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 589 815 nt2 591 831 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC9_RS13440GCF_000291015#IC9_RS13440
RROmpR
2 589 815-2 590 462 nt · Forward (+)
IC9_RS13445GCF_000291015#IC9_RS13445
HKClassicCurrent focus
2 590 455-2 591 831 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290815#IK3_RS13130Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858734
Simplified PFAM architecture for HKOC_1858734
PFAM domain coverage: 203 / 458 aa (44.3%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[244-303] | HATPase_c[351-442]
- Domain count: 3
- Matched identifier: HKOC_1858734
- Positioned domains: HAMP 182-232 ; HisKA 244-303 ; HATPase_c 351-442
Cluster members and taxonomy
Representative gene: GCF_000290815#IK3_RS13130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291015
AssemblyBaci_cere_BAG1O-2_G13159_V1 · Scaffoldhaploid
Genome composition5 585 341 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key