1 Response_reg#1
13-122 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:13:2.27e-35:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC3_RS23010
Response regulator OmpR family
Bacillus cereus VD142 · GCF_000290975
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290975#IC3_RS23010Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 228 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-226 aa · 70 aa · 30.7% of protein
Raw token
Trans_reg_C:157:6.54e-30:226:75:77- Raw architecture: Response_reg:13:2.27e-35:122:111:111#Trans_reg_C:157:6.54e-30:226:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290975::NZ_KE150048.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span126849-128991Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC3_04728RefSeq proteinWP_002090234.1
Context group ID
GCF_000290975::NZ_KE150048.1::G00056Context members
IC3_RS23005IC3_RS23010
Partner locus tags
IC3_RS23005IC3_RS23010
Partner old locus tags
IC3_04729IC3_04728
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002090234.1Primary protein accession used for annex mappings.
UniProt accessionJ9B4C2Primary UniProt accession resolved in the annex database.
UniProt IDJ9B4C2_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC3_RS23010Primary locus identifier stored in the genes table.
Old locus tagIC3_04728Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150048.1Sequence record reported by the local genomic context database.
Genomic interval128 305-128 991 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span126 849-128 991 ntGCF_000290975::NZ_KE150048.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290975::NZ_KE150048.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150048.1All displayed genes belong to this local TCS context.
Neighborhood span126 849-128 991 nt2 143 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 849 nt128 991 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC3_RS23005GCF_000290975#IC3_RS23005
HKClassic
126 849-128 291 nt · Reverse (-)
IC3_RS23010GCF_000290975#IC3_RS23010
RROmpRCurrent focus
128 305-128 991 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS23010The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1303348
Simplified PFAM architecture for RROC_1303348
PFAM domain coverage: 178 / 228 aa (78.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-121] | Trans_reg_C[157-225]
- Domain count: 2
- Matched identifier: RROC_1303348
- Positioned domains: Response_reg 13-121 ; Response_reg 13-121 ; Trans_reg_C 157-225 ; Trans_reg_C 157-225
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS23010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 224 · GCF_000290975
AssemblyBaci_cere_VD142_V2 · Scaffoldhaploid
Genome composition5 923 913 bp · 35,0% GCBacillus cereus VD142
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key