1 HAMP#1
189-258 aa · 70 aa · 11.4% of protein
Raw token
HAMP:189:1.71e-16:258:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC3_RS19865
Histidine kinase, Classic
Bacillus cereus VD142 · GCF_000290975
ClassHKTypeClassicLength612 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290975#IC3_RS19865Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length612 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage347 / 612 aa (56.7%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa612 aa
Domain-by-domain annotation4 items
2 PAS_9#2
278-374 aa · 97 aa · 15.8% of protein
Raw token
PAS_9:278:0.00000000545:374:102:1023 HisKA#3
381-447 aa · 67 aa · 10.9% of protein
Raw token
HisKA:381:4.65e-18:447:67:644 HATPase_c#4
493-605 aa · 113 aa · 18.5% of protein
Raw token
HATPase_c:493:1.11e-35:605:113:109- Raw architecture: HAMP:189:1.71e-16:258:70:69#PAS_9:278:0.00000000545:374:102:102#HisKA:381:4.65e-18:447:67:64#HATPase_c:493:1.11e-35:605:113:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290975::NZ_KE150047.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49944-52493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC3_04527RefSeq proteinWP_002089940.1
Context group ID
GCF_000290975::NZ_KE150047.1::G00047Context members
IC3_RS19860IC3_RS19865
Partner locus tags
IC3_RS19860IC3_RS19865
Partner old locus tags
IC3_04528IC3_04527
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002089940.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC3_RS19865Primary locus identifier stored in the genes table.
Old locus tagIC3_04527Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150047.1Sequence record reported by the local genomic context database.
Genomic interval50 655-52 493 nt1 839 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 944-52 493 ntGCF_000290975::NZ_KE150047.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290975::NZ_KE150047.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150047.1All displayed genes belong to this local TCS context.
Neighborhood span49 944-52 493 nt2 550 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 944 nt52 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC3_RS19860GCF_000290975#IC3_RS19860
RROmpR
49 944-50 651 nt · Forward (+)
IC3_RS19865GCF_000290975#IC3_RS19865
HKClassicCurrent focus
50 655-52 493 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS19865The current gene is the representative for this cluster.
PFAM architectureCache_WalK + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0997305
Simplified PFAM architecture for HKOC_0997305
PFAM domain coverage: 371 / 612 aa (60.6%)
1 aa612 aa
Cache_WalKHAMPPASHisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: Cache_WalK[82-173] | HAMP[206-258] | PAS[270-318] | HisKA[382-447] | HATPase_c[494-604]
- Domain count: 5
- Matched identifier: HKOC_0997305
- Positioned domains: Cache_WalK 82-173 ; HAMP 206-258 ; PAS 270-318 ; HisKA 382-447 ; HATPase_c 494-604
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS19865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 224 · GCF_000290975
AssemblyBaci_cere_VD142_V2 · Scaffoldhaploid
Genome composition5 923 913 bp · 35,0% GCBacillus cereus VD142
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key