1 HAMP#1
164-226 aa · 63 aa · 13.8% of protein
Raw token
HAMP:164:0.000000000000136:226:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC3_RS09135
Histidine kinase, Classic
Bacillus cereus VD142 · GCF_000290975
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290975#IC3_RS09135Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 455 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-296 aa · 67 aa · 14.7% of protein
Raw token
HisKA:230:0.000000000000323:296:67:643 HATPase_c#3
340-452 aa · 113 aa · 24.8% of protein
Raw token
HATPase_c:340:8.01e-33:452:113:109- Raw architecture: HAMP:164:0.000000000000136:226:63:69#HisKA:230:0.000000000000323:296:67:64#HATPase_c:340:8.01e-33:452:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290975::NZ_KE150045.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120641-122679Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC3_00005RefSeq proteinWP_002084317.1
Context group ID
GCF_000290975::NZ_KE150045.1::G00024Context members
IC3_RS09135IC3_RS09140
Partner locus tags
IC3_RS09135IC3_RS09140
Partner old locus tags
IC3_00005IC3_00004
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002084317.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC3_RS09135Primary locus identifier stored in the genes table.
Old locus tagIC3_00005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150045.1Sequence record reported by the local genomic context database.
Genomic interval120 641-122 008 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 641-122 679 ntGCF_000290975::NZ_KE150045.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290975::NZ_KE150045.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150045.1All displayed genes belong to this local TCS context.
Neighborhood span120 641-122 679 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 641 nt122 679 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC3_RS09135GCF_000290975#IC3_RS09135
HKClassicCurrent focus
120 641-122 008 nt · Reverse (-)
IC3_RS09140GCF_000290975#IC3_RS09140
RROmpR
122 005-122 679 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS09135The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1899834
Simplified PFAM architecture for HKOC_1899834
PFAM domain coverage: 225 / 455 aa (49.5%)
1 aa455 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[179-226] | HisKA[230-295] | HATPase_c[341-451]
- Domain count: 3
- Matched identifier: HKOC_1899834
- Positioned domains: HAMP 179-226 ; HisKA 230-295 ; HATPase_c 341-451
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS09135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 224 · GCF_000290975
AssemblyBaci_cere_VD142_V2 · Scaffoldhaploid
Genome composition5 923 913 bp · 35,0% GCBacillus cereus VD142
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key