1 HisKA#1
208-271 aa · 64 aa · 15.3% of protein
Raw token
HisKA:208:0.000000000000682:271:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC3_RS09095
Histidine kinase, Classic
Bacillus cereus VD142 · GCF_000290975
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290975#IC3_RS09095Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 418 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-417 aa · 104 aa · 24.9% of protein
Raw token
HATPase_c:314:8.62e-22:417:107:109- Raw architecture: HisKA:208:0.000000000000682:271:64:64#HATPase_c:314:8.62e-22:417:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290975::NZ_KE150045.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span108253-109509Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC3_00013RefSeq proteinWP_002084323.1
Context group ID
GCF_000290975::NZ_KE150045.1::G00023Context members
IC3_RS09095
Partner locus tags
IC3_RS09095
Partner old locus tags
IC3_00013
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002084323.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC3_RS09095Primary locus identifier stored in the genes table.
Old locus tagIC3_00013Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150045.1Sequence record reported by the local genomic context database.
Genomic interval108 253-109 509 nt1 257 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 253-109 509 ntGCF_000290975::NZ_KE150045.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290975::NZ_KE150045.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150045.1All displayed genes belong to this local TCS context.
Neighborhood span108 253-109 509 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 253 nt109 509 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IC3_RS09095GCF_000290975#IC3_RS09095
HKClassicCurrent focus
108 253-109 509 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS09095The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2285210
Simplified PFAM architecture for HKOC_2285210
PFAM domain coverage: 165 / 418 aa (39.5%)
1 aa418 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-270] | HATPase_c[316-417]
- Domain count: 2
- Matched identifier: HKOC_2285210
- Positioned domains: HisKA 208-270 ; HATPase_c 316-417
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS09095
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_000290975#IC3_RS09095 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 224 · GCF_000290975
AssemblyBaci_cere_VD142_V2 · Scaffoldhaploid
Genome composition5 923 913 bp · 35,0% GCBacillus cereus VD142
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key