1 HisKA#1
117-169 aa · 53 aa · 16.2% of protein
Raw token
HisKA:117:0.000000187:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC3_RS08040
Histidine kinase, Classic
Bacillus cereus VD142 · GCF_000290975
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290975#IC3_RS08040Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 328 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-327 aa · 113 aa · 34.5% of protein
Raw token
HATPase_c:215:1.65e-27:327:113:109- Raw architecture: HisKA:117:0.000000187:169:59:64#HATPase_c:215:1.65e-27:327:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290975::NZ_KE150044.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1611166-1612859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC3_00840RefSeq proteinWP_002085488.1
Context group ID
GCF_000290975::NZ_KE150044.1::G00021Context members
IC3_RS08035IC3_RS08040
Partner locus tags
IC3_RS08035IC3_RS08040
Partner old locus tags
IC3_00841IC3_00840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002085488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC3_RS08040Primary locus identifier stored in the genes table.
Old locus tagIC3_00840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150044.1Sequence record reported by the local genomic context database.
Genomic interval1 611 873-1 612 859 nt987 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 611 166-1 612 859 ntGCF_000290975::NZ_KE150044.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290975::NZ_KE150044.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150044.1All displayed genes belong to this local TCS context.
Neighborhood span1 611 166-1 612 859 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 611 166 nt1 612 859 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC3_RS08035GCF_000290975#IC3_RS08035
RROmpR
1 611 166-1 611 870 nt · Forward (+)
IC3_RS08040GCF_000290975#IC3_RS08040
HKClassicCurrent focus
1 611 873-1 612 859 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS08040The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2859553
Simplified PFAM architecture for HKOC_2859553
PFAM domain coverage: 110 / 328 aa (33.5%)
1 aa328 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-325]
- Domain count: 1
- Matched identifier: HKOC_2859553
- Positioned domains: HATPase_c 216-325
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS08040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 224 · GCF_000290975
AssemblyBaci_cere_VD142_V2 · Scaffoldhaploid
Genome composition5 923 913 bp · 35,0% GCBacillus cereus VD142
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key