1 Response_reg#1
6-113 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:6:5.37e-42:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC3_RS02570
Response regulator OmpR family
Bacillus cereus VD142 · GCF_000290975
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290975#IC3_RS02570Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:1.38e-35:221:77:77- Raw architecture: Response_reg:6:5.37e-42:113:109:111#Trans_reg_C:148:1.38e-35:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290975::NZ_KE150044.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span517615-519690Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC3_01967RefSeq proteinWP_002086850.1
Context group ID
GCF_000290975::NZ_KE150044.1::G00004Context members
IC3_RS02570IC3_RS02575
Partner locus tags
IC3_RS02570IC3_RS02575
Partner old locus tags
IC3_01967IC3_01966
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002086850.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC3_RS02570Primary locus identifier stored in the genes table.
Old locus tagIC3_01967Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150044.1Sequence record reported by the local genomic context database.
Genomic interval517 615-518 286 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span517 615-519 690 ntGCF_000290975::NZ_KE150044.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290975::NZ_KE150044.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150044.1All displayed genes belong to this local TCS context.
Neighborhood span517 615-519 690 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
517 615 nt519 690 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC3_RS02570GCF_000290975#IC3_RS02570
RROmpRCurrent focus
517 615-518 286 nt · Forward (+)
IC3_RS02575GCF_000290975#IC3_RS02575
HKClassic
518 290-519 690 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS02570The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588524
Simplified PFAM architecture for RROC_1588524
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[149-221]
- Domain count: 2
- Matched identifier: RROC_1588524
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 149-221 ; Trans_reg_C 149-221
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS02570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 224 · GCF_000290975
AssemblyBaci_cere_VD142_V2 · Scaffoldhaploid
Genome composition5 923 913 bp · 35,0% GCBacillus cereus VD142
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key