1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:7.42e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC1_RS10515
Response regulator OmpR family
Bacillus cereus VD022 · GCF_000290955
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290955#IC1_RS10515Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 215 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
141-210 aa · 70 aa · 32.6% of protein
Raw token
Trans_reg_C:141:5.59e-28:210:75:77- Raw architecture: Response_reg:3:7.42e-34:112:111:111#Trans_reg_C:141:5.59e-28:210:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290955::NZ_JH792279.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2050829-2052845Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC1_02125RefSeq proteinWP_000865984.1
Context group ID
GCF_000290955::NZ_JH792279.1::G00020Context members
IC1_RS10515IC1_RS10520
Partner locus tags
IC1_RS10515IC1_RS10520
Partner old locus tags
IC1_02125IC1_02126
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000865984.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HPR0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HPR0_BACTIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC1_RS10515Primary locus identifier stored in the genes table.
Old locus tagIC1_02125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792279.1Sequence record reported by the local genomic context database.
Genomic interval2 050 829-2 051 476 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 050 829-2 052 845 ntGCF_000290955::NZ_JH792279.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290955::NZ_JH792279.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792279.1All displayed genes belong to this local TCS context.
Neighborhood span2 050 829-2 052 845 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 050 829 nt2 052 845 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC1_RS10515GCF_000290955#IC1_RS10515
RROmpRCurrent focus
2 050 829-2 051 476 nt · Forward (+)
IC1_RS10520GCF_000290955#IC1_RS10520
HKClassic
2 051 469-2 052 845 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021305#BCG9842_RS14095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906623
Simplified PFAM architecture for RROC_1906623
PFAM domain coverage: 179 / 215 aa (83.3%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[141-210]
- Domain count: 2
- Matched identifier: RROC_1906623
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 141-210 ; Trans_reg_C 141-210
Cluster members and taxonomy
Representative gene: GCF_000021305#BCG9842_RS14095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 223 · GCF_000290955
AssemblyBaci_cere_VD022_G8177_V1 · Scaffoldhaploid
Genome composition6 685 242 bp · 34,5% GCBacillus cereus VD022
Signal transduction countsGenes 109 · HK 60 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key