1 HAMP#1
165-234 aa · 70 aa · 15.3% of protein
Raw token
HAMP:165:1.73e-16:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC1_RS08785
Histidine kinase, Classic
Bacillus cereus VD022 · GCF_000290955
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290955#IC1_RS08785Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 458 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.6% of protein
Raw token
HisKA:238:0.00000000000000198:304:67:643 HATPase_c#3
348-457 aa · 110 aa · 24.0% of protein
Raw token
HATPase_c:348:7.39e-35:457:110:109- Raw architecture: HAMP:165:1.73e-16:234:70:69#HisKA:238:0.00000000000000198:304:67:64#HATPase_c:348:7.39e-35:457:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290955::NZ_JH792279.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1689058-1691113Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIC1_01773RefSeq proteinWP_000839511.1
Context group ID
GCF_000290955::NZ_JH792279.1::G00014Context members
IC1_RS08780IC1_RS08785
Partner locus tags
IC1_RS08780IC1_RS08785
Partner old locus tags
IC1_01772IC1_01773
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000839511.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HS40Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HS40_BACTIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC1_RS08785Primary locus identifier stored in the genes table.
Old locus tagIC1_01773Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792279.1Sequence record reported by the local genomic context database.
Genomic interval1 689 737-1 691 113 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 689 058-1 691 113 ntGCF_000290955::NZ_JH792279.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290955::NZ_JH792279.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792279.1All displayed genes belong to this local TCS context.
Neighborhood span1 689 058-1 691 113 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 689 058 nt1 691 113 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC1_RS08780GCF_000290955#IC1_RS08780
RROmpR
1 689 058-1 689 735 nt · Forward (+)
IC1_RS08785GCF_000290955#IC1_RS08785
HKClassicCurrent focus
1 689 737-1 691 113 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021305#BCG9842_RS15785Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858328
Simplified PFAM architecture for HKOC_1858328
PFAM domain coverage: 226 / 458 aa (49.3%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-233] | HisKA[238-303] | HATPase_c[348-457]
- Domain count: 3
- Matched identifier: HKOC_1858328
- Positioned domains: HAMP 184-233 ; HisKA 238-303 ; HATPase_c 348-457
Cluster members and taxonomy
Representative gene: GCF_000021305#BCG9842_RS15785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 223 · GCF_000290955
AssemblyBaci_cere_VD022_G8177_V1 · Scaffoldhaploid
Genome composition6 685 242 bp · 34,5% GCBacillus cereus VD022
Signal transduction countsGenes 109 · HK 60 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key