1 HisKA_3#1
184-244 aa · 61 aa · 10.2% of protein
Raw token
HisKA_3:184:0.0000000000000214:244:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
III_RS26175
Histidine kinase, Hybrid
Bacillus mycoides · GCF_000290895
ClassHKTypeHybridLength596 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290895#III_RS26175Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_cResponse_regHTH_LUXR
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage313 / 596 aa (52.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
291-375 aa · 85 aa · 14.3% of protein
Raw token
HATPase_c:291:0.00000000000000212:375:103:1093 Response_reg#3
387-497 aa · 111 aa · 18.6% of protein
Raw token
Response_reg:387:4.6e-31:497:111:1114 HTH_LUXR#4
534-589 aa · 56 aa · 9.4% of protein
Raw token
HTH_LUXR:534:2.27e-18:589:56:58- Raw architecture: HisKA_3:184:0.0000000000000214:244:63:68#HATPase_c:291:0.00000000000000212:375:103:109#Response_reg:387:4.6e-31:497:111:111#HTH_LUXR:534:2.27e-18:589:56:58
- Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290895::NZ_JH792252.1::G00072
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span95652-97442Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIII_05268RefSeq proteinWP_002169390.1
Context group ID
GCF_000290895::NZ_JH792252.1::G00072Context members
III_RS26175
Partner locus tags
III_RS26175
Partner old locus tags
III_05268
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002169390.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9QXD3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9QXD3_BACMYDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIII_RS26175Primary locus identifier stored in the genes table.
Old locus tagIII_05268Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792252.1Sequence record reported by the local genomic context database.
Genomic interval95 652-97 442 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span95 652-97 442 ntGCF_000290895::NZ_JH792252.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290895::NZ_JH792252.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792252.1All displayed genes belong to this local TCS context.
Neighborhood span95 652-97 442 nt1 791 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 652 nt97 442 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
III_RS26175GCF_000290895#III_RS26175
HKHybridCurrent focus
95 652-97 442 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS26175The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1073656
Simplified PFAM architecture for HKOC_1073656
PFAM domain coverage: 315 / 596 aa (52.9%)
1 aa596 aa
HisKA_3HATPase_cResponse_regGerE
- Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
- Raw architecture: HisKA_3[184-245] | HATPase_c[289-375] | Response_reg[386-496] | GerE[535-589]
- Domain count: 4
- Matched identifier: HKOC_1073656
- Positioned domains: HisKA_3 184-245 ; HATPase_c 289-375 ; Response_reg 386-496 ; GerE 535-589
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS26175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290895
AssemblyBaci_cere_VD078_V1 · Scaffoldhaploid
Genome composition6 108 519 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key