1 Response_reg#1
3-93 aa · 91 aa · 37.3% of protein
Raw token
Response_reg:3:0.00000353:93:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
III_RS12375
Response regulator LytTR family
Bacillus mycoides · GCF_000290895
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290895#III_RS12375Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 244 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-241 aa · 92 aa · 37.7% of protein
Raw token
LytTR:150:1.33e-19:241:97:98- Raw architecture: Response_reg:3:0.00000353:93:91:111#LytTR:150:1.33e-19:241:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290895::NZ_JH792251.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2425424-2426158Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIII_02483RefSeq proteinWP_002165542.1
Context group ID
GCF_000290895::NZ_JH792251.1::G00033Context members
III_RS12375
Partner locus tags
III_RS12375
Partner old locus tags
III_02483
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002165542.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9R4M6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9R4M6_BACMYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIII_RS12375Primary locus identifier stored in the genes table.
Old locus tagIII_02483Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792251.1Sequence record reported by the local genomic context database.
Genomic interval2 425 424-2 426 158 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 425 424-2 426 158 ntGCF_000290895::NZ_JH792251.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290895::NZ_JH792251.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792251.1All displayed genes belong to this local TCS context.
Neighborhood span2 425 424-2 426 158 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 425 424 nt2 426 158 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
III_RS12375GCF_000290895#III_RS12375
RRLytTRCurrent focus
2 425 424-2 426 158 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS12375The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0806500
Simplified PFAM architecture for RROC_0806500
PFAM domain coverage: 91 / 244 aa (37.3%)
1 aa244 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[150-240]
- Domain count: 1
- Matched identifier: RROC_0806500
- Positioned domains: LytTR 150-240 ; LytTR 150-240
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS12375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290895
AssemblyBaci_cere_VD078_V1 · Scaffoldhaploid
Genome composition6 108 519 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key