1 Response_reg#1
6-117 aa · 112 aa · 55.4% of protein
Raw token
Response_reg:6:3.21e-21:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
III_RS11060
Response regulator NarL family
Bacillus mycoides · GCF_000290895
ClassRRTypeNarLLength202 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290895#III_RS11060Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 202 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa202 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
137-192 aa · 56 aa · 27.7% of protein
Raw token
HTH_LUXR:137:2.48e-16:192:56:58- Raw architecture: Response_reg:6:3.21e-21:117:112:111#HTH_LUXR:137:2.48e-16:192:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290895::NZ_JH792251.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2161863-2164584Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIII_02213RefSeq proteinWP_002128205.1
Context group ID
GCF_000290895::NZ_JH792251.1::G00025Context members
III_RS11060III_RS11065
Partner locus tags
III_RS11060III_RS11065
Partner old locus tags
III_02213III_02214
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128205.1Primary protein accession used for annex mappings.
UniProt accessionJ8F5V3Primary UniProt accession resolved in the annex database.
UniProt IDJ8F5V3_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIII_RS11060Primary locus identifier stored in the genes table.
Old locus tagIII_02213Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792251.1Sequence record reported by the local genomic context database.
Genomic interval2 161 863-2 162 471 nt609 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 161 863-2 164 584 ntGCF_000290895::NZ_JH792251.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290895::NZ_JH792251.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792251.1All displayed genes belong to this local TCS context.
Neighborhood span2 161 863-2 164 584 nt2 722 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 161 863 nt2 164 584 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
III_RS11060GCF_000290895#III_RS11060
RRNarLCurrent focus
2 161 863-2 162 471 nt · Reverse (-)
III_RS11065GCF_000290895#III_RS11065
HKClassic
2 162 443-2 164 584 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2114715
Simplified PFAM architecture for RROC_2114715
PFAM domain coverage: 165 / 202 aa (81.7%)
1 aa202 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[138-191]
- Domain count: 2
- Matched identifier: RROC_2114715
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 138-191 ; GerE 138-191
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290895
AssemblyBaci_cere_VD078_V1 · Scaffoldhaploid
Genome composition6 108 519 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key