1 HisKA_3#1
183-242 aa · 60 aa · 10.1% of protein
Raw token
HisKA_3:183:0.000000000000186:242:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
III_RS10855
Histidine kinase, Hybrid
Bacillus mycoides · GCF_000290895
ClassHKTypeHybridLength597 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290895#III_RS10855Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_cResponse_regHTH_LUXR
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage314 / 597 aa (52.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
289-374 aa · 86 aa · 14.4% of protein
Raw token
HATPase_c:289:6.69e-21:374:104:1093 Response_reg#3
384-495 aa · 112 aa · 18.8% of protein
Raw token
Response_reg:384:1.04e-29:495:112:1114 HTH_LUXR#4
536-591 aa · 56 aa · 9.4% of protein
Raw token
HTH_LUXR:536:6.77e-17:591:56:58- Raw architecture: HisKA_3:183:0.000000000000186:242:63:68#HATPase_c:289:6.69e-21:374:104:109#Response_reg:384:1.04e-29:495:112:111#HTH_LUXR:536:6.77e-17:591:56:58
- Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290895::NZ_JH792251.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2118644-2120437Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIII_02170RefSeq proteinWP_002167965.1
Context group ID
GCF_000290895::NZ_JH792251.1::G00024Context members
III_RS10855
Partner locus tags
III_RS10855
Partner old locus tags
III_02170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002167965.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9R3X0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9R3X0_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIII_RS10855Primary locus identifier stored in the genes table.
Old locus tagIII_02170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792251.1Sequence record reported by the local genomic context database.
Genomic interval2 118 644-2 120 437 nt1 794 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 118 644-2 120 437 ntGCF_000290895::NZ_JH792251.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290895::NZ_JH792251.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792251.1All displayed genes belong to this local TCS context.
Neighborhood span2 118 644-2 120 437 nt1 794 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 118 644 nt2 120 437 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
III_RS10855GCF_000290895#III_RS10855
HKHybridCurrent focus
2 118 644-2 120 437 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS10855The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1068715
Simplified PFAM architecture for HKOC_1068715
PFAM domain coverage: 313 / 597 aa (52.4%)
1 aa597 aa
HisKA_3HATPase_cResponse_regGerE
- Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
- Raw architecture: HisKA_3[183-244] | HATPase_c[289-373] | Response_reg[384-494] | GerE[537-591]
- Domain count: 4
- Matched identifier: HKOC_1068715
- Positioned domains: HisKA_3 183-244 ; HATPase_c 289-373 ; Response_reg 384-494 ; GerE 537-591
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS10855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290895
AssemblyBaci_cere_VD078_V1 · Scaffoldhaploid
Genome composition6 108 519 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key