1 HisKA#1
211-271 aa · 61 aa · 14.4% of protein
Raw token
HisKA:211:0.00000000000000825:271:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
III_RS07490
Histidine kinase, Classic
Bacillus mycoides · GCF_000290895
ClassHKTypeClassicLength424 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290895#III_RS07490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length424 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 424 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa424 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-421 aa · 108 aa · 25.5% of protein
Raw token
HATPase_c:314:2.24e-24:421:111:109- Raw architecture: HisKA:211:0.00000000000000825:271:61:64#HATPase_c:314:2.24e-24:421:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290895::NZ_JH792251.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1431675-1432949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIII_01483RefSeq proteinWP_002014814.1
Context group ID
GCF_000290895::NZ_JH792251.1::G00019Context members
III_RS07490
Partner locus tags
III_RS07490
Partner old locus tags
III_01483
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002014814.1Primary protein accession used for annex mappings.
UniProt accessionR8I475Primary UniProt accession resolved in the annex database.
UniProt IDR8I475_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIII_RS07490Primary locus identifier stored in the genes table.
Old locus tagIII_01483Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792251.1Sequence record reported by the local genomic context database.
Genomic interval1 431 675-1 432 949 nt1 275 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 431 675-1 432 949 ntGCF_000290895::NZ_JH792251.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290895::NZ_JH792251.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792251.1All displayed genes belong to this local TCS context.
Neighborhood span1 431 675-1 432 949 nt1 275 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 431 675 nt1 432 949 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
III_RS07490GCF_000290895#III_RS07490
HKClassicCurrent focus
1 431 675-1 432 949 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS18305Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2225006
Simplified PFAM architecture for HKOC_2225006
PFAM domain coverage: 167 / 424 aa (39.4%)
1 aa424 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[211-271] | HATPase_c[314-419]
- Domain count: 2
- Matched identifier: HKOC_2225006
- Positioned domains: HisKA 211-271 ; HATPase_c 314-419
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS18305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290895
AssemblyBaci_cere_VD078_V1 · Scaffoldhaploid
Genome composition6 108 519 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key