1 HisKA#1
257-323 aa · 67 aa · 14.0% of protein
Raw token
HisKA:257:0.00000000204:323:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
III_RS02480
Histidine kinase, Classic
Bacillus mycoides · GCF_000290895
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290895#III_RS02480Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 479 aa (37.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
368-478 aa · 111 aa · 23.2% of protein
Raw token
HATPase_c:368:5.86e-21:478:112:109- Raw architecture: HisKA:257:0.00000000204:323:67:64#HATPase_c:368:5.86e-21:478:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290895::NZ_JH792251.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span515668-517750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIII_00491RefSeq proteinWP_002167424.1
Context group ID
GCF_000290895::NZ_JH792251.1::G00009Context members
III_RS02480III_RS02485
Partner locus tags
III_RS02480III_RS02485
Partner old locus tags
III_00491III_00492
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002167424.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9RB26Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9RB26_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIII_RS02480Primary locus identifier stored in the genes table.
Old locus tagIII_00491Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792251.1Sequence record reported by the local genomic context database.
Genomic interval515 668-517 107 nt1 440 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span515 668-517 750 ntGCF_000290895::NZ_JH792251.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290895::NZ_JH792251.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792251.1All displayed genes belong to this local TCS context.
Neighborhood span515 668-517 750 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
515 668 nt517 750 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
III_RS02480GCF_000290895#III_RS02480
HKClassicCurrent focus
515 668-517 107 nt · Reverse (-)
III_RS02485GCF_000290895#III_RS02485
RROmpR
517 085-517 750 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS02480The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1628405
Simplified PFAM architecture for HKOC_1628405
PFAM domain coverage: 174 / 479 aa (36.3%)
1 aa479 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[258-322] | HATPase_c[369-477]
- Domain count: 2
- Matched identifier: HKOC_1628405
- Positioned domains: HisKA 258-322 ; HATPase_c 369-477
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS02480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290895
AssemblyBaci_cere_VD078_V1 · Scaffoldhaploid
Genome composition6 108 519 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key