1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:1.58e-40:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
III_RS01480
Response regulator OmpR family
Bacillus mycoides · GCF_000290895
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290895#III_RS01480Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:9.31e-29:221:77:77- Raw architecture: Response_reg:3:1.58e-40:112:111:111#Trans_reg_C:148:9.31e-29:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290895::NZ_JH792251.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span305365-307478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIII_00289RefSeq proteinWP_002167361.1
Context group ID
GCF_000290895::NZ_JH792251.1::G00007Context members
III_RS01480III_RS01485
Partner locus tags
III_RS01480III_RS01485
Partner old locus tags
III_00289III_00290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002167361.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9RBC9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9RBC9_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIII_RS01480Primary locus identifier stored in the genes table.
Old locus tagIII_00289Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792251.1Sequence record reported by the local genomic context database.
Genomic interval305 365-306 036 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span305 365-307 478 ntGCF_000290895::NZ_JH792251.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290895::NZ_JH792251.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792251.1All displayed genes belong to this local TCS context.
Neighborhood span305 365-307 478 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
305 365 nt307 478 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
III_RS01480GCF_000290895#III_RS01480
RROmpRCurrent focus
305 365-306 036 nt · Forward (+)
III_RS01485GCF_000290895#III_RS01485
HKClassic
306 048-307 478 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS01480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588522
Simplified PFAM architecture for RROC_1588522
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1588522
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS01480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290895
AssemblyBaci_cere_VD078_V1 · Scaffoldhaploid
Genome composition6 108 519 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key