1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:4.79e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
III_RS00435
Response regulator OmpR family
Bacillus mycoides · GCF_000290895
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290895#III_RS00435Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:154:1.92e-35:229:76:77- Raw architecture: Response_reg:6:4.79e-39:115:111:111#Trans_reg_C:154:1.92e-35:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290895::NZ_JH792251.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84920-87466Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIII_00079RefSeq proteinWP_000971867.1
Context group ID
GCF_000290895::NZ_JH792251.1::G00001Context members
III_RS00435III_RS00440
Partner locus tags
III_RS00435III_RS00440
Partner old locus tags
III_00079III_00080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000971867.1Primary protein accession used for annex mappings.
UniProt accessionR8HGV0Primary UniProt accession resolved in the annex database.
UniProt IDR8HGV0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIII_RS00435Primary locus identifier stored in the genes table.
Old locus tagIII_00079Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792251.1Sequence record reported by the local genomic context database.
Genomic interval84 920-85 627 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 920-87 466 ntGCF_000290895::NZ_JH792251.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290895::NZ_JH792251.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792251.1All displayed genes belong to this local TCS context.
Neighborhood span84 920-87 466 nt2 547 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 920 nt87 466 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
III_RS00435GCF_000290895#III_RS00435
RROmpRCurrent focus
84 920-85 627 nt · Forward (+)
III_RS00440GCF_000290895#III_RS00440
HKClassic
85 631-87 466 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS24700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016369
Simplified PFAM architecture for RROC_1016369
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1016369
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS24700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290895
AssemblyBaci_cere_VD078_V1 · Scaffoldhaploid
Genome composition6 108 519 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key