1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:1.61e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK7_RS03750
Response regulator OmpR family
Bacillus cereus VD156 · GCF_000290775
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290775#IK7_RS03750Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 229 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.9% of protein
Raw token
Trans_reg_C:153:5.09e-29:225:76:77- Raw architecture: Response_reg:5:1.61e-36:114:111:111#Trans_reg_C:153:5.09e-29:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290775::NZ_JH791865.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span747223-749759Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK7_00703RefSeq proteinWP_000041844.1
Context group ID
GCF_000290775::NZ_JH791865.1::G00013Context members
IK7_RS03750IK7_RS03755
Partner locus tags
IK7_RS03750IK7_RS03755
Partner old locus tags
IK7_00703IK7_00704
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000041844.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK7_RS03750Primary locus identifier stored in the genes table.
Old locus tagIK7_00703Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791865.1Sequence record reported by the local genomic context database.
Genomic interval747 223-747 912 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span747 223-749 759 ntGCF_000290775::NZ_JH791865.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290775::NZ_JH791865.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791865.1All displayed genes belong to this local TCS context.
Neighborhood span747 223-749 759 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
747 223 nt749 759 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK7_RS03750GCF_000290775#IK7_RS03750
RROmpRCurrent focus
747 223-747 912 nt · Forward (+)
IK7_RS03755GCF_000290775#IK7_RS03755
HKClassic
747 909-749 759 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290775#IK7_RS03750The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1248177
Simplified PFAM architecture for RROC_1248177
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1248177
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000290775#IK7_RS03750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 239 · GCF_000290775
AssemblyBaci_cere_VD156_V1 · Scaffoldhaploid
Genome composition6 421 299 bp · 34,5% GCBacillus cereus VD156
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key