1 HAMP#1
56-125 aa · 70 aa · 19.6% of protein
Raw token
HAMP:56:0.00000000611:125:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKA_RS14830
Histidine kinase, Classic
Bacillus cereus VD169 · GCF_000290735
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290735#IKA_RS14830Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 358 aa (64.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-200 aa · 64 aa · 17.9% of protein
Raw token
HisKA:137:0.00000000000000684:200:64:643 HATPase_c#3
250-347 aa · 98 aa · 27.4% of protein
Raw token
HATPase_c:250:0.00000000000000168:347:98:109- Raw architecture: HAMP:56:0.00000000611:125:70:69#HisKA:137:0.00000000000000684:200:64:64#HATPase_c:250:0.00000000000000168:347:98:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290735::NZ_JH791833.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2944675-2946434Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKA_02880RefSeq proteinWP_000800286.1
Context group ID
GCF_000290735::NZ_JH791833.1::G00039Context members
IKA_RS14830IKA_RS14835
Partner locus tags
IKA_RS14830IKA_RS14835
Partner old locus tags
IKA_02880IKA_02881
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000800286.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKA_RS14830Primary locus identifier stored in the genes table.
Old locus tagIKA_02880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791833.1Sequence record reported by the local genomic context database.
Genomic interval2 944 675-2 945 751 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 944 675-2 946 434 ntGCF_000290735::NZ_JH791833.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290735::NZ_JH791833.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791833.1All displayed genes belong to this local TCS context.
Neighborhood span2 944 675-2 946 434 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 944 675 nt2 946 434 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKA_RS14830GCF_000290735#IKA_RS14830
HKClassicCurrent focus
2 944 675-2 945 751 nt · Reverse (-)
IKA_RS14835GCF_000290735#IKA_RS14835
RROmpR
2 945 748-2 946 434 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290735#IKA_RS14830The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2759037
Simplified PFAM architecture for HKOC_2759037
PFAM domain coverage: 205 / 358 aa (57.3%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-124] | HisKA[137-200] | HATPase_c[250-347]
- Domain count: 3
- Matched identifier: HKOC_2759037
- Positioned domains: HAMP 82-124 ; HisKA 137-200 ; HATPase_c 250-347
Cluster members and taxonomy
Representative gene: GCF_000290735#IKA_RS14830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 241 · GCF_000290735
AssemblyBaci_cere_VD169_V1 · Scaffoldhaploid
Genome composition5 951 374 bp · 35,0% GCBacillus cereus VD169
Signal transduction countsGenes 111 · HK 60 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key