1 Response_reg#1
5-115 aa · 111 aa · 35.4% of protein
Raw token
Response_reg:5:1.39e-22:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKA_RS14415
Response regulator, unclassified
Bacillus cereus VD169 · GCF_000290735
ClassRRTypeunclassifiedLength314 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290735#IKA_RS14415Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length314 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage249 / 314 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa314 aa
Domain-by-domain annotation2 items
2 YcbB#2
165-302 aa · 138 aa · 43.9% of protein
Raw token
YcbB:165:2.25e-61:302:138:131- Raw architecture: Response_reg:5:1.39e-22:115:112:111#YcbB:165:2.25e-61:302:138:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290735::NZ_JH791833.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2852352-2853296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKA_02798RefSeq proteinWP_000274084.1
Context group ID
GCF_000290735::NZ_JH791833.1::G00036Context members
IKA_RS14415
Partner locus tags
IKA_RS14415
Partner old locus tags
IKA_02798
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000274084.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7RNB7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7RNB7_BACCEDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKA_RS14415Primary locus identifier stored in the genes table.
Old locus tagIKA_02798Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791833.1Sequence record reported by the local genomic context database.
Genomic interval2 852 352-2 853 296 nt945 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 852 352-2 853 296 ntGCF_000290735::NZ_JH791833.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290735::NZ_JH791833.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791833.1All displayed genes belong to this local TCS context.
Neighborhood span2 852 352-2 853 296 nt945 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 852 352 nt2 853 296 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IKA_RS14415GCF_000290735#IKA_RS14415
RRunclassifiedCurrent focus
2 852 352-2 853 296 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161355#BCERE0027_RS14390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0541888
Simplified PFAM architecture for RROC_0541888
PFAM domain coverage: 248 / 314 aa (79.0%)
1 aa314 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[4-114] | YcbB[166-302]
- Domain count: 2
- Matched identifier: RROC_0541888
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; YcbB 166-302 ; YcbB 166-302
Cluster members and taxonomy
Representative gene: GCF_000161355#BCERE0027_RS14390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 241 · GCF_000290735
AssemblyBaci_cere_VD169_V1 · Scaffoldhaploid
Genome composition5 951 374 bp · 35,0% GCBacillus cereus VD169
Signal transduction countsGenes 111 · HK 60 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key