1 Response_reg#1
5-115 aa · 111 aa · 35.8% of protein
Raw token
Response_reg:5:1.42e-21:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKA_RS08225
Response regulator, unclassified
Bacillus cereus VD169 · GCF_000290735
ClassRRTypeunclassifiedLength310 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290735#IKA_RS08225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length310 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage251 / 310 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa310 aa
Domain-by-domain annotation2 items
2 YcbB#2
160-299 aa · 140 aa · 45.2% of protein
Raw token
YcbB:160:4.27e-62:299:140:131- Raw architecture: Response_reg:5:1.42e-21:115:113:111#YcbB:160:4.27e-62:299:140:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290735::NZ_JH791833.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1604262-1605194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKA_01557RefSeq proteinWP_000500297.1
Context group ID
GCF_000290735::NZ_JH791833.1::G00024Context members
IKA_RS08225
Partner locus tags
IKA_RS08225
Partner old locus tags
IKA_01557
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000500297.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7RH60Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7RH60_BACCEDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKA_RS08225Primary locus identifier stored in the genes table.
Old locus tagIKA_01557Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791833.1Sequence record reported by the local genomic context database.
Genomic interval1 604 262-1 605 194 nt933 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 604 262-1 605 194 ntGCF_000290735::NZ_JH791833.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290735::NZ_JH791833.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791833.1All displayed genes belong to this local TCS context.
Neighborhood span1 604 262-1 605 194 nt933 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 604 262 nt1 605 194 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IKA_RS08225GCF_000290735#IKA_RS08225
RRunclassifiedCurrent focus
1 604 262-1 605 194 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161355#BCERE0027_RS08565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0551889
Simplified PFAM architecture for RROC_0551889
PFAM domain coverage: 249 / 310 aa (80.3%)
1 aa310 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-114] | YcbB[161-299]
- Domain count: 2
- Matched identifier: RROC_0551889
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; YcbB 161-299 ; YcbB 161-299
Cluster members and taxonomy
Representative gene: GCF_000161355#BCERE0027_RS08565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 241 · GCF_000290735
AssemblyBaci_cere_VD169_V1 · Scaffoldhaploid
Genome composition5 951 374 bp · 35,0% GCBacillus cereus VD169
Signal transduction countsGenes 111 · HK 60 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key