1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:4.56e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKA_RS02465
Response regulator OmpR family
Bacillus cereus VD169 · GCF_000290735
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290735#IKA_RS02465Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 223 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 35.0% of protein
Raw token
Trans_reg_C:143:4.54e-27:220:78:77- Raw architecture: Response_reg:4:4.56e-35:113:111:111#Trans_reg_C:143:4.54e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290735::NZ_JH791833.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span499934-502125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKA_00436RefSeq proteinWP_000238957.1
Context group ID
GCF_000290735::NZ_JH791833.1::G00007Context members
IKA_RS02460IKA_RS02465
Partner locus tags
IKA_RS02460IKA_RS02465
Partner old locus tags
IKA_00435IKA_00436
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000238957.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HIQ7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HIQ7_BACTIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKA_RS02465Primary locus identifier stored in the genes table.
Old locus tagIKA_00436Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791833.1Sequence record reported by the local genomic context database.
Genomic interval501 454-502 125 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span499 934-502 125 ntGCF_000290735::NZ_JH791833.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290735::NZ_JH791833.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791833.1All displayed genes belong to this local TCS context.
Neighborhood span499 934-502 125 nt2 192 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
499 934 nt502 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKA_RS02460GCF_000290735#IKA_RS02460
HKClassic
499 934-501 388 nt · Reverse (-)
IKA_RS02465GCF_000290735#IKA_RS02465
RROmpRCurrent focus
501 454-502 125 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS02940Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586819
Simplified PFAM architecture for RROC_1586819
PFAM domain coverage: 186 / 223 aa (83.4%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1586819
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS02940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 241 · GCF_000290735
AssemblyBaci_cere_VD169_V1 · Scaffoldhaploid
Genome composition5 951 374 bp · 35,0% GCBacillus cereus VD169
Signal transduction countsGenes 111 · HK 60 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key