1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:1.09e-33:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKA_RS02395
Response regulator OmpR family
Bacillus cereus VD169 · GCF_000290735
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290735#IKA_RS02395Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:1.13e-27:220:77:77- Raw architecture: Response_reg:4:1.09e-33:112:110:111#Trans_reg_C:145:1.13e-27:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290735::NZ_JH791833.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span484678-486596Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKA_00422RefSeq proteinWP_001238607.1
Context group ID
GCF_000290735::NZ_JH791833.1::G00005Context members
IKA_RS02395IKA_RS02400
Partner locus tags
IKA_RS02395IKA_RS02400
Partner old locus tags
IKA_00422IKA_00423
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001238607.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKA_RS02395Primary locus identifier stored in the genes table.
Old locus tagIKA_00422Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791833.1Sequence record reported by the local genomic context database.
Genomic interval484 678-485 349 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span484 678-486 596 ntGCF_000290735::NZ_JH791833.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290735::NZ_JH791833.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791833.1All displayed genes belong to this local TCS context.
Neighborhood span484 678-486 596 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
484 678 nt486 596 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKA_RS02395GCF_000290735#IKA_RS02395
RROmpRCurrent focus
484 678-485 349 nt · Forward (+)
IKA_RS02400GCF_000290735#IKA_RS02400
HKClassic
485 346-486 596 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290735#IKA_RS02395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588511
Simplified PFAM architecture for RROC_1588511
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1588511
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000290735#IKA_RS02395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 241 · GCF_000290735
AssemblyBaci_cere_VD169_V1 · Scaffoldhaploid
Genome composition5 951 374 bp · 35,0% GCBacillus cereus VD169
Signal transduction countsGenes 111 · HK 60 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key