1 HAMP#1
158-229 aa · 72 aa · 15.9% of protein
Raw token
HAMP:158:0.00000000188:229:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKG_RS10370
Histidine kinase, Classic
Bacillus cereus VD200 · GCF_000290715
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290715#IKG_RS10370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 452 aa (54.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-300 aa · 68 aa · 15.0% of protein
Raw token
HisKA:233:0.0000000000000195:300:68:643 HATPase_c#3
343-449 aa · 107 aa · 23.7% of protein
Raw token
HATPase_c:343:8.28e-30:449:108:109- Raw architecture: HAMP:158:0.00000000188:229:72:69#HisKA:233:0.0000000000000195:300:68:64#HATPase_c:343:8.28e-30:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290715::NZ_JH791819.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2035459-2037504Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKG_01985RefSeq proteinWP_000694892.1
Context group ID
GCF_000290715::NZ_JH791819.1::G00029Context members
IKG_RS10365IKG_RS10370
Partner locus tags
IKG_RS10365IKG_RS10370
Partner old locus tags
IKG_01984IKG_01985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000694892.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKG_RS10370Primary locus identifier stored in the genes table.
Old locus tagIKG_01985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791819.1Sequence record reported by the local genomic context database.
Genomic interval2 036 146-2 037 504 nt1 359 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 035 459-2 037 504 ntGCF_000290715::NZ_JH791819.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290715::NZ_JH791819.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791819.1All displayed genes belong to this local TCS context.
Neighborhood span2 035 459-2 037 504 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 035 459 nt2 037 504 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKG_RS10365GCF_000290715#IKG_RS10365
RROmpR
2 035 459-2 036 142 nt · Forward (+)
IKG_RS10370GCF_000290715#IKG_RS10370
HKClassicCurrent focus
2 036 146-2 037 504 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290715#IKG_RS10370The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1937322
Simplified PFAM architecture for HKOC_1937322
PFAM domain coverage: 326 / 452 aa (72.1%)
1 aa452 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[50-151] | HAMP[176-228] | HisKA[234-297] | HATPase_c[343-449]
- Domain count: 4
- Matched identifier: HKOC_1937322
- Positioned domains: ArlS_N 50-151 ; HAMP 176-228 ; HisKA 234-297 ; HATPase_c 343-449
Cluster members and taxonomy
Representative gene: GCF_000290715#IKG_RS10370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 244 · GCF_000290715
AssemblyBaci_cere_VD200_V1 · Scaffoldhaploid
Genome composition6 274 216 bp · 35,0% GCBacillus cereus VD200
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key